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Reconstructing the phylogenetic relationships of the earth's most diverse clade of freshwater fishes--order Cypriniformes (Actinopterygii: Ostariophysi): a case study using multiple nuclear loci and the mitochondrial genome

author

Henry L Bart

Wei-Jen Chen

Richard L. Mayden

Mutsumi Nishida

Masaki Miya

published in: Molecular Phylogenetics and Evolution

date of publication: 2008-12-25

main subject: fresh water, Cypriniformes, phylogenetics, Actinopterygii, freshwater fish

Cites articles 95

Date

Title

Authors

2008-07-25

Phylogenetic utility of two existing and four novel nuclear gene loci in reconstructing Tree of Life of ray-finned fishes: the order Cypriniformes (Ostariophysi) as a case study

Wei-Jen Chen, Richard L. Mayden, Masaki Miya
2008-04-11

New insights into the organization and evolution of vertebrate IRBP genes and utility of IRBP gene sequences for the phylogenetic study of the Acanthomorpha (Actinopterygii: Teleostei).

Guillaume Lecointre
2008-02-01

Molecular evolution of southern North American Cyprinidae (Actinopterygii), with the description of the new genus Tampichthys from central Mexico

Ignacio Doadrio, Richard L. Mayden
2008-01-01

Molecular phylogeny of the freshwater fish family Cobitidae (Cypriniformes: Teleostei): delimitation of genera, mitochondrial introgression and evolution of sexual dimorphism

Anabel Perdices, Jörg Bohlen
2008-10

A rapid bootstrap algorithm for the RAxML Web servers

Alexandros Stamatakis
2007-01

A molecular phylogeny of Planorboidea (Gastropoda, Pulmonata): insights from enhanced taxon sampling
2007-04

Relationships among four genera of mojarras (Teleostei: Perciformes: Gerreidae) from the western Atlantic and their tentative placement among percomorph fishes
2007-04-01

How many genes should a systematist sample? Conflicting insights from a phylogenomic matrix characterized by replicated incongruence.

Rob DeSalle
2007-06-16

Molecular phylogenetics of the family Cyprinidae (Actinopterygii: Cypriniformes) as evidenced by sequence variation in the first intron of S7 ribosomal protein-coding gene: further evidence from a nuclear gene of the systematic chaos in the family

Richard L. Mayden
2007-10-22

Phylogenetic position of the enigmatic genus Psilorhynchus (Ostariophysi: Cypriniformes): evidence from the mitochondrial genome

Richard L. Mayden
2007-08-17

The likelihood node density effect and consequences for evolutionary studies of molecular rates
2007

Independent evolution of the specialized pharyngeal jaw apparatus in cichlid and labrid fishes

Kohji Mabuchi
2007-09-01

Phylogenetic relationships of Danio within the order Cypriniformes: a framework for comparative and evolutionary studies of a model species

Jörg Freyhof, Richard L. Mayden, Masaki Miya
2007

Evolution of miniaturization and the phylogenetic position of Paedocypris, comprising the world's smallest vertebrate

Ralf Britz, Maurice Kottelat, Lukas Rüber, Peter Kee Lin Ng
2007-02-25

Families of Cobitoidea (Teleostei; Cypriniformes) as revealed from nuclear genetic data and the position of the mysterious genera Barbucca, Psilorhynchus, Serpenticobitis and Vaillantella

Jörg Bohlen
2007-04-27

The complete mitochondrial genome of the Chinese hook snout carp Opsariichthys bidens (Actinopterygii: Cypriniformes) and an alternative pattern of mitogenomic evolution in vertebrate

Richard L. Mayden
2006-06-01

Resolution of phylogenetic conflict in large data sets by increased taxon sampling
2006-11-02

Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): the first evidence toward resolution of higher-level relationships of the world's largest freshwater fish clade based on 59 whole mitogenome sequences
2006-11-01

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis
2006-12

A phylogenetic analysis of the major groups of catfishes (Teleostei: Siluriformes) using rag1 and rag2 nuclear gene sequences

John P. Sullivan, John G. Lundberg
2005-10-25

Magic bullets and golden rules: data sampling in molecular phylogenetics

Axel Meyer
2005-06-01

The systematic component of phylogenetic error as a function of taxonomic sampling under parsimony
2005-05

Phylogenomics and the reconstruction of the tree of life

Frédéric Delsuc, Hervé Philippe
2005-07-01

Further support for the clades obtained by multiple molecular phylogenies in the acanthomorph bush
2005-01-01

A molecular analysis of the interrelationships of tetraodontiform fishes (Acanthomorpha: Tetraodontiformes).
2005-03-02

More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy

Antonis Rokas
2005-10-04

Comparison of evolutionary rates in the mitochondrial DNA cytochrome b gene and control region and their implications for phylogeny of the Cobitoidea (Teleostei: Cypriniformes).

Richard L. Mayden
2005-10-01

Can Incomplete Taxa Rescue Phylogenetic Analyses from Long-Branch Attraction?,Can incomplete taxa rescue phylogenetic analyses from long-branch attraction?

John J. Wiens
2004-09-01

Novel evolutionary relationship among four fish model systems

Wei-Jen Chen, Guillermo Ortí, Axel Meyer
2004-05-01

Isolation and characterization of two distinct growth hormone cDNAs from the tetraploid smallmouth buffalofish (Ictiobus bubalus).
2004-03

In search of notothenioid (Teleostei) relatives
2004-04-01

Molecular phylogenetic relationships of Eastern Asian Cyprinidae (pisces: cypriniformes) inferred from cytochrome b sequences

Article - wd:Q40010537

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