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MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island

author

Satheesh Nair

John Wain

Justin O'Grady

Salvatore Rubino

Philip M Ashton

Timothy J Dallman

Wolfgang Rabsch

1951 -

published in: Nature Biotechnology

date of publication: 2014-12-08

main subject: antibiotic resistance

Cites articles 30

Date

Title

Authors

2014-08-20

Poretools: a toolkit for analyzing nanopore sequence data

Nicholas J. Loman, Aaron R Quinlan
2014-10-20

A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer

Aaron R Quinlan, Nicholas J. Loman
2014-09-24

A first look at the Oxford Nanopore MinION sequencer
2014-08-29

poRe: an R package for the visualization and analysis of nanopore sequencing data

Mick Watson, Javier Santoyo-Lopez, Karim Gharbi, Mark Blaxter
2014-11-25

Long-read, whole-genome shotgun sequence data for five model organisms

Jane Yeadon, Chen-Shan Chin, David Catcheside, Adam Phillippy, Casey M Bergman, Susan E. Celniker
2014-10-21

Typhoid fever

John Wain, Rene S. Hendriksen, Leon Ochiai
2013-04-01

Next-generation sequencing in clinical microbiology

John Wain
2013-03-29

Revolutionising bacteriology to improve treatment outcomes and antibiotic stewardship

John Wain, David M. Livermore
2013-06

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
2012-11-07

Public health value of next-generation DNA sequencing of enterohemorrhagic Escherichia coli isolates from an outbreak

Katherine Harker, Julian Parkhill, John Wain, Gordon Dougan, Timothy J Dallman, Anthony Underwood
2012-01-31

High-resolution genotyping of the endemic Salmonella Typhi population during a Vi (typhoid) vaccination trial in Kolkata

Kat Holt, Leon Ochiai, Mohammad Ali, Shanta Dutta, John Clemens, Gordon Dougan, Derek J Pickard, Sujit K Bhattacharya, Barnali Bhaduri
2012-05

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

Anton Bankevich, Alexander V. Sirotkin, Alexey A. Gurevich, Sergey Nikolenko, Max A. Alekseyev, Pavel A. Pevzner
2012-06-01

Typhoid fever and paratyphoid fever: Systematic review to estimate global morbidity and mortality for 2010.

Geoffrey Buckle, Robert E. Black, Christa L Fischer Walker
2011-01-04

Temporal fluctuation of multidrug resistant salmonella typhi haplotypes in the mekong river delta region of Vietnam

Jeremy Farrar, Christiane Dolecek, Tran Tinh Hien, Nguyen Van Vinh Chau, Gordon Dougan, Kat Holt, James I Campbell, Stephen Baker, Duy Thanh Pham, Tran Vu Thieu Nga, Tran Thuy Chau, Nguyen Van Minh Hoang
2011-07

Emergence of a globally dominant IncHI1 plasmid type associated with multiple drug resistant typhoid

François-Xavier Weill, Gordon Dougan, Ciara Walsh, Satheesh Nair, John Wain, Séamus Fanning, Julian Parkhill, Kat Holt, Sam Kariuki, Stephen Baker, Shanta Dutta, Duy Thanh Pham, Tran Vu Thieu Nga, Minh-Duy Phan
2010-04-14

Typhoid in Kenya is associated with a dominant multidrug-resistant Salmonella enterica serovar Typhi haplotype that is also widespread in Southeast Asia

Kat Holt, Robert A Kingsley, Gordon Dougan, Yik-Ying Teo, John Kiiru, Joyce Mwituria, Jane Muyodi, Gunturu Revathi
2010-02-09

Parameters for accurate genome alignment
2010-12-08

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition

Hilary G. Morrison, Jay Shendure, Jacob O Kitzman, Emily H Turner
2009-02-22

Continuous base identification for single-molecule nanopore DNA sequencing

Hai-Chen Wu, Hagan Bayley
2009-01-21

Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi

John Wain, Gemma C Langridge, Julian Parkhill, Nicholas Thomson, Zulfiqar Bhutta, Kat Holt, Michael Andrew Quail, Halina Norbertczak, Rumina Hasan, Gordon Dougan, Karen Mungall, Nathalie Bason
2009-03-20

Biopython: freely available Python tools for computational molecular biology and bioinformatics

Iddo Friedberg, Peter J Cock, Tiago Antao, Brad Chapman, Cymon John Cox, Thomas Hamelryck, Bartek Wilczynski, Andrew Dalke
2008-07-27

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

Julian Parkhill, Ian Goodhead, François-Xavier Weill, John Wain, Christiane Dolecek, Philippe Roumagnac, Kat Holt, Gordon Dougan, Stephen Baker, Richard Rance, Mark Achtman, Camila J Mazzoni, Duncan J Maskell
2008-11-17

Variation in Salmonella enterica serovar typhi IncHI1 plasmids during the global spread of resistant typhoid fever

Satheesh Nair, John Wain, Minh-Duy Phan, Nicholas Thomson, Zulfiqar Bhutta, Jason Hinds, Kat Holt, Philip Butcher, Rumina Hasan, Richard W Titball, Gordon Dougan, Claire Kidgell, Fiona G M Cooke
2007-08-29

Clonal expansion and microevolution of quinolone-resistant Salmonella enterica serotype typhi in Vietnam from 1996 to 2004

Patrick Grimont, François-Xavier Weill
2006-11-01

Evolutionary history of Salmonella typhi

Jeremy Farrar, François-Xavier Weill, Christiane Dolecek, Sylvain Brisse, Gordon Dougan, Stephen Baker, Mark Achtman, Camilo J Acosta
2005-04-01

The 120 592 bp IncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different antibiotic-resistance determinants, two iron-acquisition systems and other putative virulence-associated functions

Andreas Schlüter
2004-05-01

The role of prophage-like elements in the diversity of Salmonella enterica serovars.

Nicholas Thomson, John Wain, Julian Parkhill, Zulfiqar Bhutta, Gordon Dougan, Stephen Baker, Derek J Pickard, Alasdair Ivens, Maria C Fookes, Muna Anjum, Nancy Hamlin, Kaman Chan Kim
2001-10-01

Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18

Julian Parkhill, Nicholas Thomson, John Wain, Matthew Holden, Phillippa L. Connerton, Paul Davis, Jeremy Farrar, Ashraful Haque, Anders Krogh, Kim Rutherford, Kate S. Baker
1998-03

Base-calling of automated sequencer traces using phred. I. Accuracy assessment
1959-09-01

A new phage-typing scheme for Salmonella typhi-murium

Article - wd:Q41611086

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