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SELECTpro: effective protein model selection using a structure-based energy function resistant to BLUNDERs

författare

Pierre Baldi

publicerad i: BMC Structural Biology

utgivningsår: 2008-12-03

Refererar artiklar 42

Datum

Titel

Författare

2007

Critical assessment of methods of protein structure prediction-Round VII

Tim Hubbard, Burkhard Rost, Anna Tramontano, Andriy Kryshtafovych, Krzysztof Fidelis, John Moult
2007-01-01

Prediction of global and local model quality in CASP7 using Pcons and ProQ.

Björn Wallner, Arne Elofsson
2007-01-01

Assessment of predictions in the model quality assessment category.

Anna Tramontano, Domenico Cozzetto, Andriy Kryshtafovych, Miguel Ceriani
2007-05-08

Ab initio modeling of small proteins by iterative TASSER simulations

Jeffrey Skolnick
2005-07-01

SCRATCH: a protein structure and structural feature prediction server
2005-05-13

Physics-based protein-structure prediction using a hierarchical protocol based on the UNRES force field: assessment in two blind tests.

Harold Scheraga
2005-01-01

Relationship between multiple sequence alignments and quality of protein comparative models.

Anna Tramontano, Domenico Cozzetto
2004-10-18

Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation.
2004-01-01

Protein modeling and structure prediction with a reduced representation

Andrzej Koliński
2004-04-01

SPICKER: a clustering approach to identify near-native protein folds

Jeffrey Skolnick
2003-11-01

Protein fragment reconstruction using various modeling techniques

Jeffrey Skolnick, Andrzej Koliński
2003-10-01

An improved protein decoy set for testing energy functions for protein structure prediction.

David Baker, Brian Kuhlman, Richard Bonneau
2003-09

A graph-theory algorithm for rapid protein side-chain prediction

Roland Dunbrack
2003-05-01

Can correct protein models be identified?

Arne Elofsson, Björn Wallner
2003-02-01

An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes.

David Baker, Tanja Kortemme
2003-01-01

Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller

Björn Wallner, Arne Elofsson
2002-01-01

Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners.
2002-05-01

Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles.

Burkhard Rost, Pierre Baldi
2002-05-01

Prediction of coordination number and relative solvent accessibility in proteins.

Rita Casadio, Pierre Baldi
2002-01-01

Identifying native-like protein structures using physics-based potentials
2002-08-01

Distinguishing native conformations of proteins from decoys with an effective free energy estimator based on the OPLS all-atom force field and the Surface Generalized Born solvent model

Emilio Gallicchio, Anders Wallqvist
2001-12-01

Free energies of protein decoys provide insight into determinants of protein stability.
2001-11-01

Pcons: a neural-network-based consensus predictor that improves fold recognition.

Arne Elofsson, Janusz Bujnicki, Leszek Rychlewski
2001-08-14

TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints.

Daisuke Kihara, Hui Lu, Andrzej Koliński
2000-01-01

Comparative protein structure modeling. Introduction and practical examples with modeller.
2000-09

Modeling of loops in protein structures
2000-09-12

Native protein sequences are close to optimal for their structures

David Baker
2000

Comparative protein structure modeling of genes and genomes

Francisco Melo
2000-01-01

The Protein Data Bank

Philip Bourne, Ilya Shindyalov, Helen M. Berman
2000-02-01

Can a pairwise contact potential stabilize native protein folds against decoys obtained by threading?

Rafael J. Najmanovich, Michele Vendruscolo
1999

Processing and analysis of CASP3 protein structure predictions
1999-05-07

Discrimination of the native from misfolded protein models with an energy function including implicit solvation

Martin Karplus

Artikel - wd:Q41957147

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