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Analysis of the use of codon pairs in the HE gene of the ISA virus shows a correlation between bias in HPR codon-pair use and mortality rates caused by the virus.

author

Mario Tello

Eugenio Spencer

published in: Virology Journal

date of publication: 2013-06-06

main subject: bias

Cites articles 48

Date

Title

Authors

2011-05-01

Codon bias, tRNA pools and horizontal gene transfer

Tamir Tuller
2011-09-21

Presence of a full-length highly polymorphic region (HPR) in the ISAV haemagglutinin-esterase does not affect the primary functions of receptor binding and esterase activity
2011-06-15

Origin and evolution of SINEs in eukaryotic genomes

Dmitri A Kramerov
2011-04-01

Determinants of translation efficiency and accuracy

Yitzhak Pilpel
2010-12-09

A low-pathogenic variant of infectious salmon anemia virus (ISAV-HPR0) is highly prevalent and causes a non-clinical transient infection in farmed Atlantic salmon (Salmo salar L.) in the Faroe Islands
2010-11-23

Synonymous but not the same: the causes and consequences of codon bias

Grzegorz Kudła, Joshua B. Plotkin
2010-09-01

Bioinformatic analysis of the genome of infectious salmon anemia virus associated with outbreaks with high mortality in Chile
2010-06-13

Live attenuated influenza virus vaccines by computer-aided rational design

Eckard Wimmer
2010-04-28

Genomic organization of eukaryotic tRNAs

Camille Stephan-Otto Attolini, Peter F. Stadler, Toralf Kirsten
2010-04-01

An evolutionarily conserved mechanism for controlling the efficiency of protein translation

Tamir Tuller, Yitzhak Pilpel
2010-03

Fine-tuning translation kinetics selection as the driving force of codon usage bias in the hepatitis A virus capsid

Susana Guix
2010-06-01

Polypteridae (Actinopterygii: Cladistia) and DANA-SINEs insertions

Teresa Capriglione
2009-12-01

Surveillance for infectious salmon anaemia virus HPR0 in marine Atlantic salmon farms across Scotland
2009-10-13

Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences

Michal Linial, Menachem Fromer
2009-06-26

Infectious salmon anaemia virus (ISAV) isolated from the ISA disease outbreaks in Chile diverged from ISAV isolates from Norway around 1996 and was disseminated around 2005, based on surface glycoprotein gene sequences
2009-04-01

Coding-sequence determinants of gene expression in Escherichia coli

David Tollervey, Grzegorz Kudła, Joshua B. Plotkin
2008-10-08

Preferred and avoided codon pairs in three domains of life

Maido Remm, Tanel Tenson
2008-08-04

First detection, isolation and molecular characterization of infectious salmon anaemia virus associated with clinical disease in farmed Atlantic salmon (Salmo salar) in Chile
2008-06-27

Virus attenuation by genome-scale changes in codon pair bias

Eckard Wimmer
2007-12-19

Highly conserved regions of influenza a virus polymerase gene segments are critical for efficient viral RNA packaging

Peter Palese, Raúl Rabadán
2007-05-23

Codon usage and replicative strategies of hepatitis A virus

Maria Isabel Costafreda Salvany
2007-04-29

Novel SINE families from salmons validate Parahucho (Salmonidae) as a distinct genus and give evidence that SINEs can incorporate LINE-related 3'-tails of other SINEs
2007-03-01

Codon conservation in the influenza A virus genome defines RNA packaging signals

Nadia Naffakh, Paul Digard, Julia Gog, India Leclercq
2006-10-01

Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity

Eckard Wimmer
2006-07-01

Sequence analysis of the fusion protein gene from infectious salmon anemia virus isolates: evidence of recombination and reassortment
2006-02-09

tRNA properties help shape codon pair preferences in open reading frames
2006-08-28

Transmission of infectious salmon anaemia virus (ISAV) in farmed populations of Atlantic salmon (Salmo salar).
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Probing the secondary structure of salmon SmaI SINE RNA.
2005-10-01

The relationship among gene expression, folding free energy and codon usage bias in Escherichia coli.
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Susceptibility and immune responses following experimental infection of MHC compatible Atlantic salmon (Salmo salar L.) with different infectious salmon anaemia virus isolates
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Solving the riddle of codon usage preferences: a test for translational selection
2002-12-01

Polymorphism in the infectious salmon anemia virus hemagglutinin gene: importance and possible implications for evolution and ecology of infectious salmon anemia disease

Espen Rimstad

Article - wd:Q42016334

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