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Fine-grained annotation and classification of de novo predicted LTR retrotransposons.

autor

Sascha Steinbiss

1980 -

Ute Willhoeft

publicat în: Nucleic Acids Research

Data de publicare: 2009-11-01

Limbă: limba engleză

Subiectul principal: retrotransposon

Citează articole 39

Dată

Title

Autori

2009-07-23

Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

Cédric Feschotte
2009-02-18

Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes

Xulio Maside, Carolina Bartolomé
2009-01

Ensembl 2009

Tim Hubbard, Fiona Cunningham, Stephen Trevanion, Richard M. Durbin, Nathan Johnson, Laura Clarke, Andreas K Kähäri, Ewan Birney, Paul Flicek, Julio Fernandez Banet
2009-01

FlyBase: enhancing Drosophila Gene Ontology annotations
2009-04-05

TEclass--a tool for automated classification of unknown eukaryotic transposable elements.

Wojciech Makalowski
2008-12-23

AnnotationSketch: a genome annotation drawing library

Christin Schärfer, Malte Mader, Sascha Steinbiss
2008-11-04

GtRNAdb: a database of transfer RNA genes detected in genomic sequence
2008-11-01

Keeping active endogenous retroviral-like elements in check: the epigenetic perspective
2008-01-01

Effects of retroviruses on host genome function

Patric Jern
2008-01-14

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

Ute Willhoeft
2008-01

The Pfam protein families database

Alex Bateman, Sean Eddy, Robert D. Finn, Jaina Mistry, Goran Ceric, Sofia K. Forslund, Erik Sonnhammer
2007-12-01

A unified classification system for eukaryotic transposable elements

Francois Sabot, Alan H. Schulman, Jeffrey L. Bennetzen, Phillip J SanMiguel, Pierre Capy, Olivier Panaud, Boulos Chalhoub, Michele Morgante
2007-10-10

Discovering and detecting transposable elements in genome sequences

Hadi Quesneville, Casey M Bergman
2007-09-25

The Gypsy Database (GyDB) of mobile genetic elements

Andrés Moya
2007-07-17

Automated recognition of retroviral sequences in genomic data--RetroTector

Patric Jern, Jonas Blomberg
2007-05-07

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

Hao Wang
2007-04-03

De novo identification of LTR retrotransposons in eukaryotic genomes
2007-04

Transposable elements and the epigenetic regulation of the genome
2006

Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome

Michael Ashburner, Hadi Quesneville, Casey M Bergman
2006-10-25

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
2006-10-05

Genetics: Junk DNA as an evolutionary force

Cristina Vieira
2006-04-01

Efficient algorithms and software for detection of full-length LTR retrotransposons.

Srinivas Aluru
2005

Repbase Update, a database of eukaryotic repetitive elements
2005

The Sequence Ontology: a tool for the unification of genome annotations

Richard M. Durbin, Michael Ashburner, Lincoln Stein, Chris Mungall, Mark Yandell, Karen Eilbeck, Suzanna Lewis
2004-05-18

The diversity of LTR retrotransposons
2004

Long terminal repeat retrotransposons of Mus musculus
2003-02-01

LTR_STRUC: a novel search and identification program for LTR retrotransposons.
2002

The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective

Michael Ashburner, Casey M Bergman, Susan E. Celniker, Suzanna Lewis
2001-10-10

Polypurine tract formation by Ty1 RNase H.
2001-08-01

Reverse transcription of retroviruses and LTR retrotransposons
2000-06

EMBOSS: the European Molecular Biology Open Software Suite
1999-12-01

A sequence immediately upstream of the plus-strand primer is essential for plus-strand DNA synthesis of the Saccharomyces cerevisiae Ty1 retrotransposon

Articol - wd:Q42957758

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