Richard Lavery

1952 -

occupation: researcher

award received: CNRS silver medal

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Articles 81

Date

Title

Authors

2020-02-03

Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties

Richard Lavery, Elodie Laine, Alessandra Carbone
2018-04-25

A molecular dynamics study of adenylyl cyclase: The impact of ATP and G-protein binding

Elisa Frezza, Richard Lavery, Juliette Martin
2015-02-06

Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics

Marco Pasi, Richard Lavery
2015-12-01

Improving the treatment of coarse-grain electrostatics: CVCEL

Nicoletta Ceres, Richard Lavery
2014-06-06

Analyzing ion distributions around DNA

Richard Lavery, Marco Pasi
2014-09-15

Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNA

Pablo D. Dans, Ignacio Faustino, Richard Lavery, Modesto Orozco
2014-09-26

μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA

Marco Pasi, Charles Laughton, Alberto Perez, Jirí Sponer, Richard Lavery, Modesto Orozco
2013-10-01

Temperature dependence of the DNA double helix at the nanoscale: structure, elasticity, and fluctuations

Sam Meyer, Daniel Jost, Nikos Theodorakopoulos, Michel Peyrard, Richard Lavery, Ralf Everaers
2012-11-19

PaLaCe: A Coarse-Grain Protein Model for Studying Mechanical Properties

Marco Pasi, Richard Lavery
2012-05-01

A Protein Solvation Model Based on Residue Burial

Marco Pasi, Richard Lavery
2012-05-06

Arbitrary protein-protein docking targets biologically relevant interfaces

Richard Lavery
2012-01-30

Towards a molecular view of transcriptional control

Richard Lavery
2012-09-24

Exploring polymorphisms in B-DNA helical conformations

Alberto Perez, Ignacio Faustino, Richard Lavery, Modesto Orozco
2012-05-11

Multistep drug intercalation: molecular dynamics and free energy studies of the binding of daunomycin to DNA

Richard Lavery
2011-05-10

CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures

Marco Pasi, Richard Lavery
2011-05-30

Protein-DNA recognition triggered by a DNA conformational switch

Richard Lavery
2009-01

Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling

Stéfan Engelen, Sophie Sacquin-Mora, Alessandra Carbone, Richard Lavery
2009-07-22

Conformational analysis of nucleic acids revisited: Curves+

Richard Lavery, Maher Moakher
2009-10-22

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA.

Thomas E. Cheatham, III, Alberto Perez, Charles Laughton, Richard Lavery, Jirí Sponer, Modesto Orozco
2009-07-01

Deforming DNA: from physics to biology

Masayuki Takahashi, Richard Lavery
2009-07-01

Coarse-grain simulations of the R-SNARE fusion protein in its membrane environment detect long-lived conformational sub-states

Marc Baaden, Peter J Bond, Mark S.P. Sansom, Richard Lavery
2009-01-01

Modeling the mechanical response of proteins to anisotropic deformation

Sophie Sacquin-Mora, Richard Lavery
2009-10-07

Protein-DNA binding specificity: a grid-enabled computational approach applied to single and multiple protein assemblies

Richard Lavery
2009-07-01

A free energy pathway for the interaction of the SRY protein with its binding site on DNA from atomistic simulations

Richard Lavery
2008-07-09

On the molecular mechanism of drug intercalation into DNA: a simulation study of the intercalation pathway, free energy, and DNA structural changes

Richard Lavery, Biman Bagchi
2008-08-07

Identification of protein interaction partners and protein-protein interaction sites

Sophie Sacquin-Mora, Alessandra Carbone, Richard Lavery
2007-12-04

Probing the flexibility of the bacterial reaction center: the wild-type protein is more rigid than two site-specific mutants

Sophie Sacquin-Mora, Bernhard Frick, Richard Lavery
2007-05-01

Locating the active sites of enzymes using mechanical properties

Sophie Sacquin-Mora, Richard Lavery
2006-09-15

Dynamics and stability of E-cadherin dimers

Fabien Cailliez, Richard Lavery
2006-01-20

Investigating the local flexibility of functional residues in hemoproteins

Sophie Sacquin-Mora, Richard Lavery
2006-06-01

ARTIST: an activated method in internal coordinate space for sampling protein energy landscapes.

Normand Mousseau, Richard Lavery
2006-10-01

Kinking occurs during molecular dynamics simulations of small DNA minicircles.

Richard Lavery

Human - wd:Q51628995

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