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Predicting reliable regions in protein alignments from sequence profiles.

author

David Tudor Jones

1966 -

published in: Journal of Molecular Biology

date of publication: 2003-07-01

language: English

main subject: sequence alignment

Cites articles 40

Date

Title

Authors

2002-01-29

A study on protein sequence alignment quality

Arne Elofsson
2002-07-01

In search for more accurate alignments in the twilight zone

Weizhong Li, Adam Godzik
2002-02-01

Predicting reliable regions in protein sequence alignments
2002-06-01

A novel approach to local reliability of sequence alignments.

Mattias Ohlsson
2002-02-01

Evolutionary predictions of binding surfaces and interactions.

Olivier Lichtarge
2002-04-25

Critical residues for structure and catalysis in short-chain dehydrogenases/reductases

Kurt D Berndt, Stefan Knapp
2002-08-01

Plasticity of enzyme active sites

Janet Thornton, Christine Orengo, Annabel E Todd
2001-01-01

Analysis and assessment of comparative modeling predictions in CASP4

Veronica Morea, Anna Tramontano
2001-03-23

Pairwise sequence alignment below the twilight zone,Pairwise sequence alignment below the twilight zone11Edited by B. Honig

Fred E Cohen
2001-01-01

Comparative modeling of CASP4 target proteins: combining results of sequence search with three-dimensional structure assessment

Česlovas Venclovas
2000-04-01

Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
2000-07-01

Large-scale comparison of protein sequence alignment algorithms with structure alignments.

Roland Dunbrack
2000-08

Improving the quality of twilight-zone alignments

Leszek Rychlewski, Łukasz Jaroszewski
2000-06-02

Enhanced genome annotation using structural profiles in the program 3D-PSSM
2000-01-01

The Protein Data Bank

Philip Bourne, Ilya Shindyalov, Helen M. Berman
2000-10-01

Practical limits of function prediction
1999-02

Twilight zone of protein sequence alignments
1999-12-01

Post-processing long pairwise alignments.
1999-04-09

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences
1999-12-01

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices

Chris Ponting, Eugene Koonin, Aravind L Iyer
1999-09-15

A systematic comparison of protein structure classifications: SCOP, CATH and FSSP

Caroline Hadley
1998

Hidden Markov models for detecting remote protein homologies
1998-01-01

Touring protein fold space with Dali/FSSP
1998-06-01

Removing near-neighbour redundancy from large protein sequence collections.
1998-09

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

Philip Bourne, Ilya Shindyalov
1997-09-01

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

David J. Lipman, Webb Miller
1996-02-01

Quantifying the local reliability of a sequence alignment.
1996-06-01

Near-optimal sequence alignment
1996-08-02

Mapping the protein universe
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The structural alignment between two proteins: is there a unique answer?

Adam Godzik
1995-02-01

A method to predict functional residues in proteins
1995-05-09

Short-chain dehydrogenases/reductases (SDR)

Bengt Persson

Article - wd:Q52012972

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