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Cites articles 75

Date

Title

Authors

2017-12-07

Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii

Alan Walker, Indrani Mukhopadhya, Sarah Moraïs, Diane Ouwerkerk, Petra Louis, Philip J. Cooper, Nathalie Juge
2017-11-06

How much do direct livestock emissions actually contribute to global warming?

Andy Reisinger, Harry Clark
2017-10-27

PULDB: the expanded database of Polysaccharide Utilization Loci.

Nicolas Terrapon, Elodie Drula, Bernard Henrissat, Vincent Lombard, Harry J. Gilbert
2017-09-19

The CRISPR Spacer Space Is Dominated by Sequences from Species-Specific Mobilomes

Eugene Koonin, Yuri Wolf, Kira Makarova, Sergey A Shmakov, Konstantin Severinov
2017-08-15

Heritable Bovine Rumen Bacteria Are Phylogenetically Related and Correlated with the Cow's Capacity To Harvest Energy from Its Feed

Adi Doron-Faigenboim
2017-06-12

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

Markus Göker, Axel Visel, Nikos C. Kyrpides, Hans-Peter Klenk, Philip Hugenholtz, Tanja Woyke, David Paez-Espino, Jan P Meier-Kolthoff, William B. Whitman, Jonathan A. Eisen, Supratim Mukherjee, Amrita Pati, George M. Garrity, Natalia N. Ivanova, Emiley A Eloe-Fadrosh, Georgios A. Pavlopoulos, Rekha Seshadri, Neha Varghese, R Cameron Coates, Michalis Hadjithomas, Yasuo Yoshikuni
2017-03-22

Complex pectin metabolism by gut bacteria reveals novel catalytic functions

Alan Cartmell, Ana Luís, Joe Gray, Jonathon Briggs, Nicolas Terrapon, Rob Field, Gideon Davies, Bernard Henrissat, Harry J. Gilbert, Wade Abbott, Didier Ndeh, Aurore Labourel
2017-03-15

metaSPAdes: a new versatile metagenomic assembler

Dmitry Meleshko, Anton Korobeynikov, Pavel A. Pevzner
2017-01-04

Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements

Supratim Mukherjee, Nikos C. Kyrpides, Tbk Reddy
2016-12-12

Cellulosomes: bacterial nanomachines for dismantling plant polysaccharides

Sarah Moraïs
2016-10-18

An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography

Nandita R Garud, Katherine Pollard, Stephen Nayfach
2016-10-30

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

Natalia N. Ivanova, Nikos C. Kyrpides, Kim M. Handley, Phillip B Pope, Georgios A. Pavlopoulos, Adam R Rivers, Joao Carlos Setubal, Ricardo Cavicchioli, Marcel Huntemann, Krishna Palaniappan, John Webster, Vincent J Denef, Katherine D. McMahon, Ghasem H Salekdeh, Ernest Szeto, Manoj Pillay, Victor Markowitz, Jinghua Huang, Wen-Tso Liu
2016-10-19

Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

Yang Li, Siva Ganesh, Peter H. Janssen, Sandra Kittelmann
2016-10-13

IMG/M: integrated genome and metagenome comparative data analysis system

Natalia N. Ivanova, Nikos C. Kyrpides, Neha Varghese, Marcel Huntemann, Krishna Palaniappan, Manoj Pillay, Victor Markowitz, Michalis Hadjithomas, Ernest Szeto, Evan W Andersen, Kristin Tennessen, Jinghua Huang
2016-08-08

The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

Hauke Smidt, Dirk Haller, Bärbel Stecher, Ilias Lagkouvardos, Thomas Clavel, Jens Walter, Bärbel U Foesel, Jörg Overmann, Rüdiger Pukall, Mathias W Hornef
2016-08-17

Uncovering Earth’s virome

Georgios A. Pavlopoulos, Marcel Huntemann, Natalia N. Ivanova, Nikos C. Kyrpides, Edward M. Rubin, Emiley A Eloe-Fadrosh, Natalia Mikhailova
2016-07-29

Biome engineering-2020.

Harald Brüssow
2016-06-01

Microbiome Data Science: Understanding Our Microbial Planet

Nikos C. Kyrpides, Natalia N. Ivanova, Emiley A Eloe-Fadrosh
2016-05-17

Reducing emissions from agriculture to meet the 2 °C target

Sarah Carter, Henk Westhoek, Paul C. West, Mariana C. Rufino, Mario Herrero, Louis Verchot, Peter Smith, Elke Stehfest, Detlef P. van Vuuren, Michael Obersteiner, Jean-Francois Soussana, Henry Neufeldt, Francesco N Tubiello, Martin Herold, Alessandra Falcucci
2016-05-13

Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges

Zoe G Cardon, Trent R. Northen, Timothy J. Donohue, Rob Knight, Martin J. Blaser, Mildred Cho, Katherine Pollard, Mary E Maxon
2016-05-04

Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation

Hilary P. Browne, Sam Forster, Blessing O Anonye
2016-04-19

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Ivica Letunic, Peer Bork
2016-04-18

Evolution by gene loss

Cristian Cañestro, Ricard Albalat
2016-02-24

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

Natalia N. Ivanova, Nikos C. Kyrpides, Amrita Pati, Marcel Huntemann, Konstantinos Mavromatis, Victor Markowitz, Ernest Szeto, Manoj Pillay, Kristin Tennessen, Krishnaveni Palaniappan
2016-02-18

Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes

Igor V. Grigoriev, Aviv Regev, Kevin V. Solomon, Aaron T. Wright, Samuel Owen Purvine, Anna Lipzen, Michelle O'Malley, Heather M Brewer, Michael K Theodorou
2016-02-18

Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance

Rainer Roehe, Richard James Dewhurst, Carol-Anne Duthie, Anthony Waterhouse, Thomas Freeman, Mick Watson
2016-01-27

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

Rex R Malmstrom, Nikos C. Kyrpides, Natalia N. Ivanova, Tanja Woyke, Danielle Goudeau, Peter F. Dunfield, Stephen E. Grasby, Wen-Jun Li, Amrita Pati, Brian P. Hedlund, Edward M. Rubin, Jessica Jarett, Hailiang Dong, Emiley A Eloe-Fadrosh, Jennifer Pett-Ridge, Brandon R Briggs
2015-12-09

Computational approaches to predict bacteriophage-host relationships

Jeroen Raes, Bas E. Dutilh, Robert A Edwards, Karoline Faust
2015-11-06

A Meta-analysis of Bacterial Diversity in the Feces of Cattle
2015-10-09

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

Gemma Henderson, Siva Ganesh, Wayne Young, Arjan Jonker, Peter H. Janssen, Mads Frost Bertelsen, Ilma Tapio
2015-07-25

Toward a standard in structural genome annotation for prokaryotes

Nikos C. Kyrpides, Natalia N. Ivanova, Samuel H Payne, Amrita Pati, Jennifer R Wortman, Granger G Sutton, Galina Ovchinnikova, Owen White, Natalia Mikhailova
2015-02-01

Vitamin B12 in meat and dairy products

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Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

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