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Benchmarking common quantification strategies for large-scale phosphoproteomics.

автор

Christian D. Kelstrup

Jesper V. Olsen

Alexander Hogrebe

Brian T Weinert

опубліковано в: Nature Communications

дата публікації: 2018-03-13

мова: англійська мова

Cites articles 52

Дата

Заголовок

Автори

2017-06-06

An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes

Christian D. Kelstrup, Michael Lund Nielsen, Tanveer S Batth, Claus Lindbjerg Andersen, Karina Dalsgaard Sørensen, Jesper V. Olsen
2017-02-03

Deep Coverage of Global Protein Expression and Phosphorylation in Breast Tumor Cell Lines Using TMT 10-plex Isobaric Labeling

Noah Dephoure, Thomas A Neubert
2017-11-29

Performance Evaluation of the Q Exactive HF-X for Shotgun Proteomics.

Jesper V. Olsen, Alexander Hogrebe, Christian D. Kelstrup
2016-07-25

On the Statistical Significance of Compressed Ratios in Isobaric Labeling: A Cross-Platform Comparison

Pilar Ximénez-Embún, Fernando Garcia, Javier Munoz, Shabaz Mohammed
2016-06-27

The Perseus computational platform for comprehensive analysis of (prote)omics data

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2016-07-01

Uses and misuses of the fudge factor in quantitative discovery proteomics

Yohann Couté, Thomas Burger
2016-05-25

Proteogenomics connects somatic mutations to signalling in breast cancer

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2016-01-04

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2016-10-10

Improvement of Quantitative Measurements in Multiplex Proteomics Using High-Field Asymmetric Waveform Spectrometry.

Pierre Thibault
2016-01-01

Simple and Reproducible Sample Preparation for Single-Shot Phosphoproteomics with High Sensitivity.

Abida Sultan, Jesper V. Olsen
2016-03-01

High-performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implications

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2015-03-27

Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics

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2015-01-06

Evaluating multiplexed quantitative phosphopeptide analysis on a hybrid quadrupole mass filter/linear ion trap/orbitrap mass spectrometer

Steven P. Gygi, Mark P Jedrychowski
2014-11-04

Off-line high-pH reversed-phase fractionation for in-depth phosphoproteomics

Jesper V. Olsen, Chiara Francavilla, Tanveer S Batth
2014-08-12

Comparing SILAC- and stable isotope dimethyl-labeling approaches for quantitative proteomics
2014-06-17

Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.

Marco Y. Hein, Jürgen Cox, Маттіас Манн
2014-07-03

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2014-03

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2014-03-11

Ion coalescence of neutron encoded TMT 10-plex reporter ions

Toby Mathieson
2014-11-10

Rapid and deep proteomes by faster sequencing on a benchtop quadrupole ultra-high-field Orbitrap mass spectrometer

Jesper V. Olsen, Christian D. Kelstrup, Tanveer S Batth
2014-01-01

SILAC yeast: from labeling to comprehensive proteome quantification
2013-11-27

Novel parallelized quadrupole/linear ion trap/Orbitrap tribrid mass spectrometer improving proteome coverage and peptide identification rates

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2013-06-04

In Vivo Phosphoproteomics Analysis Reveals the Cardiac Targets of -Adrenergic Receptor Signaling

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2013-07-02

Measuring and managing ratio compression for accurate iTRAQ/TMT quantification.

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2012-10-25

Accurate multiplexed proteomics at the MS2 level using the complement reporter ion cluster

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2012-06-06

Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues

Alicia Lundby, Nikolai Baastrup Nordsborg, Jesper V. Olsen
2012-03-15

Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response

Jesper V. Olsen, Stephen P Jackson, Brian T Weinert, Petra Beli, Маттіас Манн
2012-10-22

Benchmarking stable isotope labeling based quantitative proteomics.

Maarten Altelaar, Albert J.R. Heck, Shabaz Mohammed, Christian K Frese, Marco L Hennrich, H Th Marc Timmers
2012-05-10

Optimized fast and sensitive acquisition methods for shotgun proteomics on a quadrupole orbitrap mass spectrometer.

Michael Lund Nielsen, Jesper V. Olsen, Clifford Young, Christian D. Kelstrup
2012-02-16

Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos.

Gregory B Hurst, Robert Hettich, Chongle Pan, Karuna Chourey
2011-12-30

iTRAQ labeling is superior to mTRAQ for quantitative global proteomics and phosphoproteomics
2011-10-02

Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging

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Стаття - wd:Q55402062

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