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Network hubs in root-associated fungal metacommunities.

author

Hirokazu Toju

published in: Microbiome

date of publication: 2018-06-23

main subject: metacommunity

Cites articles 76

Date

Title

Authors

2018-05-01

Core microbiomes for sustainable agroecosystems

Hirokazu Toju, Kabir G. Peay, Masato Yamamichi, Kei Hiruma, Ken Naito, Masayuki Ushio, Kentaro Yoshida, Klaus Schlaeppi, Yang Bai, Shinji Fukuda, Toby Kiers
2017-03-28

Research priorities for harnessing plant microbiomes in sustainable agriculture

Posy E Busby, Maggie R Wagner, Jonathan A. Eisen, Alison E. Bennett
2017-01-17

Deciphering composition and function of the root microbiome of a legume plant

Kyle Hartman, Klaus Schlaeppi
2017-10-02

Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition

Gregor Langen, Juliana Almario, Alga Zuccaro, Marcel Bucher, George Coupland
2017-01-24

Species-rich networks and eco-evolutionary synthesis at the metacommunity level

Hirokazu Toju, Masato Yamamichi, Takehito Yoshida, Paulo R. Guimarães, Jens M Olesen, Akihiko Mougi, John N. Thompson
2016-07-01

Dimensions of biodiversity in the Earth mycobiome

Kabir G. Peay, Peter G Kennedy
2016-05-23

DADA2: High-resolution sample inference from Illumina amplicon data

Paul J. McMurdie, Susan P. Holmes
2016-05-02

Ericaceous plant-fungus network in a harsh alpine-subalpine environment

Hirokazu Toju
2016-03-17

Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent

Kei Hiruma, Soledad Sacristan, Ryohei Thomas Nakano
2016-03-01

Network modules and hubs in plant-root fungal biomes

Hirokazu Toju, Akifumi S Tanabe, Takashi Hayakawa
2016-01-20

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

Samuel Kroll, Sang-Tae Kim, Eric Kemen, Matthew T Agler, Detlef Weigel
2016-10-27

Drivers of yeast community composition in the litter and soil of a temperate forest.

Petr Baldrian
2016-04-19

Sequence variation in nuclear ribosomal small subunit, internal transcribed spacer and large subunit regions of Rhizophagus irregularis and Gigaspora margarita is high and isolate-dependent.

Maarja Öpik, Christophe Roux, Lili Milani, Mari Moora, Martin Zobel, Andres Metspalu, John Davison, Martti Vasar, Teele Jairus
2015-06

Towards an integrated phylogenetic classification of the Tremellomycetes

Feng-Yan Bai, Marizeth Groenewald, Xin-Zhan Liu, Markus Göker, Mats Wedin, Helge Thorsten Lumbsch, Teun Boekhout
2015-12-02

Functional overlap of the Arabidopsis leaf and root microbiota

Yang Bai, Nina Dombrowski, Stijn Spaepen, Mitja Remus-Emsermann, Julia Vorholt, Alice Carolyn McHardy, Philipp C Münch
2015-10-23

Below-ground plant-fungus network topology is not congruent with above-ground plant-animal network topology

Hirokazu Toju, Jens M Olesen, Jes Olesen, Paulo R. Guimarães, John N. Thompson
2015-06-02

Lack of host specificity leads to independent assortment of dipterocarps and ectomycorrhizal fungi across a soil fertility gradient

Kabir G. Peay, Stuart James Davies, Sylvester Tan
2015-05-07

Sparse and compositionally robust inference of microbial ecological networks

Martin J. Blaser, Dan Littman, Richard Bonneau
2015-01-20

Structure, variation, and assembly of the root-associated microbiomes of rice

Jonathan A. Eisen, Srijak Bhatnagar, Venkatesan Sundaresan
2015-03-01

The plant microbiome at work

Klaus Schlaeppi, Davide Bulgarelli
2014-11-01

Fungal biogeography. Global diversity and geography of soil fungi

Henrik Nilsson, Kessy Abarenkov, Urmas Kõljalg, Kadri Pärtel, Kadri Põldmaa, Luis Villarreal Ruiz, Sandra Abell, Alessandro Saitta, Cherdchai Phosri, Petr Kohout, Tom May, Matthew Edward Smith, Erki Saluveer, Sten Anslan, Leho Tedersoo, Mohammad Bahram, Taavi Riit, Sergei Põlme, Kaarin Parts, Karl-Henrik Larsson, André De Kesel, David Ratkowsky, Francis Q Brearley, Kentaro Hosaka, József Geml, Terry W. Henkel, Meike Piepenbring, Nourou Soulemane Yorou, Genevieve M. Gates
2014-10-20

Assembly of complex plant-fungus networks

Hirokazu Toju, Jes Olesen, Paulo R. Guimarães, John N. Thompson
2014-05-10

Plant growth-promoting traits of epiphytic and endophytic yeasts isolated from rice and sugar cane leaves in Thailand

Savitree Limtong
2014-06-01

Disease ecology. Ecological and evolutionary effects of fragmentation on infectious disease dynamics

Otso Ovaskainen, Ayco Tack, Tommi Mononen, Anna-Liisa Laine, Charlotte Tollenaere
2014-06-10

ForceAtlas2, a continuous graph layout algorithm for handy network visualization designed for the Gephi software

Mathieu Jacomy, Tommaso Venturini
2014-04-14

Endemism and functional convergence across the North American soil mycobiome

Rytas J. Vilgalys, Sydney I. Glassman, Jennifer M. Bhatnagar, Kabir G. Peay, Matthew Edward Smith, Thomas D. Bruns
2014-02-28

Sequence depth, not PCR replication, improves ecological inference from next generation DNA sequencing

Kabir G. Peay
2013-12-17

Arbuscular mycorrhizal fungal networks vary throughout the growing season and between successional stages

Maarja Öpik, Tim J Daniell, Darren M. Evans, Mari Moora, Martin Zobel, John Davison, Marc-André Selosse
2013

Two new computational methods for universal DNA barcoding: a benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants

Akifumi S Tanabe, Hirokazu Toju
2013-10-15

Isolation and biological activities of an endophytic Mortierella alpina strain from the Antarctic moss Schistidium antarctici

Vivian H. Pellizari
2013-09-24

Towards a unified paradigm for sequence-based identification of fungi

Henrik Nilsson, Kessy Abarenkov, Lauri Saag, Irja Saar, Urmas Kõljalg, Kadri Põldmaa, Carolina Senés, Tine Grebenc, Petr Kohout, Kabir G. Peay, Ursula Peintner, Johan Bengtsson-Palme, James A. Scott, María Paz Martín, Leho Tedersoo, Mohammad Bahram, Matthew Edward Smith, Martin Hartmann, Karl-Henrik Larsson, Tuula Niskanen, D. Lee Taylor, Björn D. Lindahl, Robert Lücking, Paul Kirk, Thomas D. Bruns, Ursula Eberhardt, Ave Suija, P. Brandon Matheny
2013-08-25

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Morgan Langille, Rob Knight, Curtis Huttenhower, J Gregory Caporaso, Daniel McDonald, Dan Knights, Jose C Clemente, Jesse R Zaneveld, Deron E Burkepile, Rebecca Vega Thurber

Article - wd:Q55499621

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