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Sequence-based nomenclature: a reply to Thines and Zamora and provisions for an amended proposal "from the floor" to allow DNA sequences as types of names

author

Robert Lücking

1964 -

David Leslie Hawksworth

1946 -

Paul Kirk

1952 -

published in: IMA Fungus

date of publication: 2018-06

language: English

Cites articles 57

Date

Title

Authors

2019-01-11

International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2008 Revision),International Code of Nomenclature of Prokaryotes.

George M. Garrity
2019-03-01

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

Lucas Czech
2018-02-23

New light on names and naming of dark taxa.

Henrik Nilsson, Martin Ryberg
2018-05-22

NGS barcode sequencing in taxonomy and diagnostics, an application in "Candida" pathogenic yeasts with a metagenomic perspective

Claudia Colabella, Carlo Tascini, Matteo Bassetti
2018-05-22

Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them

David Leslie Hawksworth, Robert Lücking
2018-06

Considerations and consequences of allowing DNA sequence data as types of fungal taxa

Urmas Kõljalg, Ruben De Lange, Mehdi Mehrabi, Irja Saar, Taiga Kasuya, Jean-Michel Bellanger, Sergey Volobuev, Elena Voronina, Raquel Pino-Bodas, Ireneia Melo, Asunción Morte, Sergio Santamaria, Viacheslav Anatolievich Spirin, Josiane Santana Monteiro, Vicent Calatayud, Patinjareveettil Manimohan, Leena Myllys, Pradeep Kumar Divakar, Hermann Voglmayr, Marcin Piątek, Soili Kristina Stenroos, James Colin Lendemer, Teuvo Tapio Ahti, David Boertmann, Marc Stadler, Mats Wedin, Karl-Henrik Larsson, Helge Thorsten Lumbsch, Alfredo Vizzini, Cécile Gueidan, Gro Gulden, Sanja Tibell, Adam Flakus, Isabel Salcedo, Roy Halling, Teun Boekhout, Philippe Clerc, Dagmar Triebel, Holger Thues, Christian Printzen, Martin Kukwa, Gintaras Kantvilas, Johannes Zacharias Groenewald, Pedro Willem Crous, Arne Thell, Rafael Felipe Castañeda Ruiz, Roy Watling, André Aptroot, Marco Thines, Ulf Arup, Alan Orange, Ana Crespo, Vera Fedorovna Malysheva, Lucia Muggia, Heikki Kotiranta, Beatrice Senn-Irlet, Ursula Peintner, Damien Ertz, Olivier Raspé, Anna Ronikier, Raul Tena Lahoz, Julia Pawłowska, Paul Diederich, Lajos István Nagy, József Geml, Andrew N. Miller, Walter Michael Jaklitsch, Peter R. Johnston, Mary Catherine Aime, Shaun Ross Pennycook, Huzefa A. Raja, Ruvishika S Jayawardena, Bart Buyck, Martin Grube, Ibai Olariaga Ibarguren, Patrick Matheny, Ursula Eberhardt, Xingzhong Liu, André De Kesel, Anna Rosling, Alain Favre, Martin Bemmann, Rubén Martínez-Gil, Takayuki Aoki, Ivana Kušan, Karen Hansen, Seppo Huhtinen, Uwe Lindemann, Joost Augustinus Stalpers, Ave Suija, Thomas Læssøe, Meike Piepenbring, Otto Kullervo Miettinen, Juan Carlos Hernandez-Boluda, Sergio Pérez-Ortega, Toby Spribille, Chayanard Phukhamsakda, Martina Réblová, Jacques Fournier, Luis Quijada, Sergio Pérez Gorjón, Karl Soop, Bálint Dima, Uwe Braun, Joaquina María García-Martín, Egil Bendiksen, Dániel G Knapp, Juan Carlos Zamora, Thomas Stjernegaard Jeppesen, Oleg Shchepin, László Sándor Lőkös, Pierre-Arthur Moreau, Eugene Popov, Zdeněk Palice, Philippe Callac, Guilhermina Miguel da Silva Marques, Armin Mešić, Kerry Knudsen, Thomas Edison E Dela Cruz, Carlos Ladó, Vladimír Antonín, Tine Grebenc, Jan Borovička, Vit Hubka, Isaac Garrido Benavent
2018-05-28

Ten reasons why a sequence-based nomenclature is not useful for fungi anytime soon

Marc Stadler, Kevin David Hyde, Marco Thines, Takayuki Aoki, Lei Cai
2017-09-28

Fungal nomenclature evolving: changes adopted by the 19th International Botanical Congress in Shenzhen 2017, and procedures for the Fungal Nomenclature Session at the 11th International Mycological Congress in Puerto Rico 2018.

David Leslie Hawksworth, Tom May
2017-05-01

Bifiguratus adelaidae, gen. et sp. nov., a new member of Mucoromycotina in endophytic and soil-dwelling habitats

Jason E. Stajich, Terry J Torres-Cruz, Alessandro Desirò, Gian Maria Niccolò Benucci, Christopher A Dunlap, Andrea Porras-Alfaro
2017-09-06

Description of Bifiguratus adelaidae: The hunt ends for one of the "Top 50 Most Wanted Fungi".

Keith Anthony Seifert
2017-04-13

A worldwide phylogeography of the whiteworm lichens Thamnolia reveals three lineages with distinct habitats and evolutionary histories

Leif Tibell, Hanna Johannesson
2017-02-15

Fungal Identification Using Molecular Tools: A Primer for the Natural Products Research Community

Nicholas H. Oberlies, Huzefa A. Raja
2017-12-06

Phylogenetic classification and generic delineation of Calyptosphaeria gen. nov., Lentomitella, Spadicoides and Torrentispora (Sordariomycetes).
2016-12-21

T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life

François Lutzoni, Jolanta Miądlikowska
2016-10-19

Sequence-based classification and identification of Fungi

Henrik Nilsson, Maarja Öpik, Urmas Kõljalg, Kessy Abarenkov, David Hibbett, Paul Kirk, Conrad Lamoraal Schoch, David M. Geiser
2016-08-11

Hidden Genetic Diversity in an Asexually Reproducing Lichen Forming Fungal Group

Ruth del Prado, Pradeep Kumar Divakar, Helge Thorsten Lumbsch
2016-04-14

Species boundaries in plant pathogenic fungi: a Colletotrichum case study

Pedro Willem Crous, Lei Cai
2015-05-27

Identifying and naming plant-pathogenic fungi: past, present, and future

Mike Wingfield, David Leslie Hawksworth, Pedro Willem Crous
2015-06-16

No need to replace an "anomalous" primate (Primates) with an "anomalous" bear (Carnivora, Ursidae)

Eliécer E. Gutiérrez
2015-03-12

Multi-locus tree and species tree approaches toward resolving a complex clade of downy mildews (Straminipila, Oomycota), including pathogens of beet and spinach

Hermann Voglmayr, Marco Thines, Steven J Klosterman, Volker Kummer
2014-12-30

True morels (Morchella, Pezizales) of Europe and North America: evolutionary relationships inferred from multilocus data and a unified taxonomy

Karen Hansen, Pierre-Arthur Moreau
2014-12-19

CATCh, an ensemble classifier for chimera detection in 16S rRNA sequencing studies

Yvan Saeys, Jeroen Raes
2014-06-01

Identification and nomenclature of the genus Penicillium

Cobus Meyer Visagie, Jens Christian Frisvad, Giancarlo Perrone, Robert Archibald Samson
2014-06-01

Phylogeny, identification and nomenclature of the genus Aspergillus

Robert Archibald Samson, Cobus Meyer Visagie, Vit Hubka, Giancarlo Perrone, Antonia Susca, Jens Christian Frisvad, Sándor Kocsubé
2014-05-09

The application of the name Xylaria hypoxylon, based on Clavaria hypoxylon of Linnaeus

Marc Stadler, David Leslie Hawksworth
2014-08-22

Genetic analysis of hair samples attributed to yeti, bigfoot and other anomalous primates

Bryan Sykes, Michel Sartori
2014-06-30

A single macrolichen constitutes hundreds of unrecognized species

Robert Lücking, Manuela Dal-Forno
2014-06-30

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

Henrik Nilsson, Kessy Abarenkov, Urmas Kõljalg, Peter R. Johnston, Cobus Meyer Visagie, Hiran Anjana Ariyawansa, Jian-Kui Liu, Miguel Ángel García, Ana Crespo, Ning Zhang, Huzefa A. Raja, Soili Kristina Stenroos, Wieland Meyer, Pradeep Kumar Divakar, María Paz Martín, Richard C Hamelin, Leho Tedersoo, Raquel Pino-Bodas, Bevan S. Weir, Bhushan Shrestha, Karl-Henrik Larsson, Tuula Niskanen, Cécile Gueidan, Zacharias Wilhelm de Beer, Helge Thorsten Lumbsch, Sajeewa Sandeshya Nilukana Maharachchikumbura, Giuseppina Mulé, Mike Wingfield, Marizeth Groenewald, Teun Boekhout, Scott Federhen, Johannes Zacharias Groenewald, Pedro Willem Crous, Kevin David Hyde, Samantha C. Karunarathna, Valérie Hofstetter, Conrad Lamoraal Schoch, Paul Kirk, Ulrike Damm, Keith Anthony Seifert, Andrew N. Miller, Mary Catherine Aime, Ekaphan Kraichak, Laszlo Irinyi, Gareth W. Griffith, Csaba Vágvölgyi, Bryn Dentinger, Jos Houbraken, Dimuthu Manamgoda, Kazuaki Tanaka, Barbara Robbertse, Bart Buyck, Martin Grube, Cletus P Kurtzman, Ibai Olariaga Ibarguren, Wendy A Untereiner, Andrew McQuade Minnis, Karen Hansen, Martin I. Bidartondo, Marieka Gryzenhout, Margarita Dueñas, Dirk Redecker, Steven D. Leavitt
2014-03-01

A polyphasic taxonomy of Daldinia (Xylariaceae)

Marc Stadler, Derek Persoh, Cony Antonio Decock, Thomas Læssøe
2013-03-28

Diaporthe: a genus of endophytic, saprobic and plant pathogenic fungi

Chirlei Glienke de Blanco, Pedro Willem Crous, Johannes Zacharias Groenewald
2013-12-17

Multiple ITS haplotypes in the genome of the lichenized basidiomycete Cora inversa (Hygrophoraceae): fact or artifact?

Manuela Dal-Forno, Robert Lücking
2013-09-30

Analytical tools and databases for metagenomics in the next-generation sequencing era

Article - wd:Q56536938

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