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Into the wild: new yeast genomes from natural environments and new tools for their analysis

author

Francisco A Cubillos

Jacob L. Steenwyk

Antonis Rokas

published in: FEMS Yeast Research

date of publication: 2020-03-01

Cites articles 119

Date

Title

Authors

2019-01-09

Reducing phenolic off-flavors through CRISPR-based gene editing of the FDC1 gene in Saccharomyces cerevisiae x Saccharomyces eubayanus hybrid lager beer yeasts

Valmik K Vyas, Kevin J Verstrepen
2019-02-11

Bioprospecting for brewers: Exploiting natural diversity for naturally diverse beers

Francisco A Cubillos, Brian Gibson, Kristoffer Krogerus
2019-02-25

Hybridization is a recurrent evolutionary stimulus in wild yeast speciation

Chris Eberlein, Guillaume Charron, James B Anderson, Christian Landry
2019-03-08

OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling

Nathan D Price, Chen-Guang Liu, Zhuo Wang
2019-03-13

Plasmid-Based CRISPR-Cas9 Gene Editing in Multiple Candida Species

Lisa Lombardi, João Oliveira-Pacheco, Geraldine Butler
2019-04-02

CRISPR-mediated genome editing in non-conventional yeasts for biotechnological applications

Yongjin J Zhou
2019-04-04

Evolution of a novel chimeric maltotriose transporter in Saccharomyces eubayanus from parent proteins unable to perform this function

Chris Todd Hittinger
2019-05-21

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts

Jacob L. Steenwyk, Xing-Xing Shen, Xiaofan Zhou, Brandt F. Eichman, Antonis Rokas, Abigail Leavitt LaBella, Noah P Bradley, Neža Čadež, Chris Todd Hittinger
2019-08-18

A new inducible CRISPR-Cas9 system useful for genome editing and study of double-strand break repair in Candida glabrata

Laetitia Maroc, Cécile Fairhead
2019-10-21

Fermentation innovation through complex hybridization of wild and domesticated yeasts

Quinn K. Langdon, David Peris, EmilyClare P Baker, Ursula Bond, Paula Gonçalves, José Paulo Sampaio, Chris Todd Hittinger
2018-01-01

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes.

Antonio Ventosa, Henrik Christensen, David R. Arahal, Milton S. da Costa, Alejandro P Rooney, Sofie De Meyer
2018-01-26

MUMmer4: A fast and versatile genome alignment system.

Guillaume Marçais, Adam Phillippy, Steven Salzberg, Aleksey V. Zimin, Arthur L. Delcher
2018-05-01

Genome editing in Kluyveromyces and Ogataea yeasts using a broad-host-range Cas9/gRNA co-expression plasmid.

John Morrissey, Jean-Marc Daran, Jack T. Pronk, Hannes Juergens, Arthur Gorter de Vries, Thomas Perli, Arun S Rajkumar
2018-03-02

Factors driving metabolic diversity in the budding yeast subphylum.

Antonis Rokas
2018-02-22

Copy Number Variation in Fungi and Its Implications for Wine Yeast Genetic Diversity and Adaptation.

Antonis Rokas
2018-04-04

nQuire: a statistical framework for ploidy estimation using next generation sequencing.

Hernán A. Burbano, Sophien Kamoun
2018-04-11

Genome evolution across 1,011 Saccharomyces cerevisiae isolates

Matteo De Chiara, Anders Bergström, Benjamin Barre, Jean-Marc Aury, Benjamin Istace, Pascal Barbry, Kevin Lebrigand
2018-05-03

Long-read sequencing data analysis for yeasts

Jia-Xing Yue, Gianni Liti
2018-03-01

Single-step Precision Genome Editing in Yeast Using CRISPR-Cas9

Riddhiman K Garge, Aashiq H Kachroo, Edward Marcotte
2018-08-01

Repeated Cis-Regulatory Tuning of a Metabolic Bottleneck Gene during Evolution

Russell L Wrobel
2018-07-12

The origin and adaptive evolution of domesticated populations of yeast from Far East Asia

Shou-Fu Duan
2018-07-16

Genome Mining of Non-Conventional Yeasts: Search and Analysis of MAL Clusters and Proteins

Triinu Visnapuu, Tiina Alamäe
2018-08-30

Whole Genome Sequencing, de Novo Assembly and Phenotypic Profiling for the New Budding Yeast Species Saccharomyces jurei

Samina Naseeb, Christopher G. Knight, Daniela Delneri
2018-10-02

Phylogeography of the wild Lager-brewing ancestor (Saccharomyces eubayanus) in Patagonia

David Peris, Diego Libkind
2018-09-01

Microbe Profile: Saccharomyces eubayanus, the missing link to lager beer yeasts

José Paulo Sampaio
2018-11-01

sppIDer: A Species Identification Tool to Investigate Hybrid Genomes with High-Throughput Sequencing

Quinn K. Langdon, David Peris
2018-11-08

Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum

Xing-Xing Shen, Xiaofan Zhou, Jacob L. Steenwyk, Drew T Doering, Quinn K. Langdon, Moriya Ohkuma
2017-01-01

Novel brewing yeast hybrids: creation and application

Kristoffer Krogerus, Frederico Magalhães
2017-02-21

Dynamic genome-scale metabolic modeling of the yeast Pichia pastoris

José R Pérez-Correa, Eduardo Agosin
2017-02-07

Effect of Temperature on the Prevalence of Saccharomyces Non cerevisiae Species against a S. cerevisiae Wine Strain in Wine Fermentation: Competition, Physiological Fitness, and Influence in Final Wine Composition

Eladio Barrio, Amparo Querol
2017-03-14

Extensive Copy Number Variation in Fermentation-Related Genes Among Saccharomyces cerevisiae Wine Strains

Jacob L. Steenwyk, Antonis Rokas
2017-03-03

Characterization of Saccharomyces uvarum (Beijerinck, 1898) and related hybrids: assessment of molecular markers that predict the parent and hybrid genomes and a proposal to name yeast hybrids

Teun Boekhout

Article - wd:Q89489979

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