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Identifying orthologs with OMA: A primer

author

Monique Zahn

Christophe Dessimoz

1980 -

Natasha M Glover

published in: F1000Research

date of publication: 2020-01-17

Cites articles 21

Date

Title

Authors

2019-07-01

iHam and pyHam: visualizing and processing hierarchical orthologous groups

Christophe Dessimoz
2019-01-08

Immune genes are hotspots of shared positive selection across birds and mammals

Allison J Shultz, Timothy B Sackton
2019-01-10

Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python

Alex Warwick Vesztrocy, Adrian M Altenhoff, Christophe Dessimoz
2019-06-24

OMA standalone: orthology inference among public and custom genomes and transcriptomes

Adrian M Altenhoff, Magdalena Zarowiecki, Alex Warwick Vesztrocy, Maximilian J. Telford, Natasha M Glover, Christophe Dessimoz
2019-10-01

Advances and Applications in the Quest for Orthologs

Christophe Dessimoz, Maria-Jesus Martin, Matthieu Muffato, Mateus Patricio, Yan Wang, Paul D Thomas, Erik Sonnhammer, Jaime Huerta-Cepas, Ingo Ebersberger, Toni Gabaldón
2019-01-01

Inferring Orthology and Paralogy

Christophe Dessimoz
2018-01-01

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces

Christophe Dessimoz, Adrian M Altenhoff, Klara Kaleb, Alex Warwick Vesztrocy, Karina Zile, Tarcisio M. Farias
2017-03-21

Comparative genomics reveals contraction in olfactory receptor genes in bats

Christophe Dessimoz, Stephen J. Rossiter
2017-05-22

Integrative modeling of gene and genome evolution roots the archaeal tree of life

Bastien Boussau, Tom A. Williams, Gergely J Szöllősi, Anja Spang, Peter G Foster, Martin Embley
2017-07-31

The house spider genome reveals an ancient whole-genome duplication during arachnid evolution.

Yasuko Akiyama-Oda, Peter Funch, Sam Griffiths-Jones, Ignacio Maeso, Matthew Ronshaugen, Montserrat Torres-Oliva, Kim C Worley, Gregor Bucher, Stephen Richards, Vanessa L. González, Jonathan A. Coddington, Rodrigo Nunes da Fonseca, Cheryl Y. Hayashi, Angelika Stollewerk, Donna Muzny, Jean-François Flot, Richard A Gibbs, John Werren
2017-07-01

Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference.

Christophe Dessimoz, Adrian M Altenhoff
2016-04-04

Standardized benchmarking in the quest for orthologs

Lars Juhl Jensen, Peer Bork, Damian Szklarczyk, Jaime Huerta-Cepas, Christian von Mering, Toni Gabaldón, Brigitte Boeckmann, Christophe Dessimoz, Sofia K. Forslund, Erik Sonnhammer, Matthieu Muffato, Kimmen Sjölander, Cécile Pereira, Leszek P Pryszcz, Salvador Capella-Gutierrez, Adrian M Altenhoff, Paul D Thomas, Ioannis Xenarios, Suzanna Lewis, Maria-Jesus Martin, Odile Lecompte
2016-07-28

Lysine acetylation in mitochondria: From inventory to function

Henning Redestig, Matthew A Hannah, Iris Finkemeier
2016-08-08

Membrane Proteins Are Dramatically Less Conserved than Water-Soluble Proteins across the Tree of Life

Christophe Dessimoz, Victor Sojo, Andrew Pomiankowski
2016-10-25

Evolutionary hallmarks of the human proteome: chasing the age and coregulation of protein-coding genes

Javier De Las Rivas, Ricardo Assunção Vialle, José Miguel Ortega, Katia de Paiva Lopes, Francisco José Campos Laborie
2013-01-03

Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships

Panče Panov, Fran Supek, Tomislav Smuc, Sašo Džeroski
2013-01-14

Inferring hierarchical orthologous groups from orthologous gene pairs

Christophe Dessimoz, Adrian M Altenhoff
2013-04-04

Functional and evolutionary implications of gene orthology.

Toni Gabaldón, Eugene Koonin
2012-01-01

Using phylogenetic profiles to predict functional relationships.

Matteo Pellegrini
2008-12-04

Algorithm of OMA for large-scale orthology inference

Christophe Dessimoz
1970-06

Distinguishing homologous from analogous proteins,Distinguishing Homologous from Analogous Proteins

Article - wd:Q89849103

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