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Cites articles 64

Date

Title

Authors

2018-06-01

Segmental allopolyploidy in action: Increasing diversity through polyploid hybridization and homoeologous recombination

David J. Bertioli, Márcio C Moretzsohn, Jeff J. Doyle
2018-01-10

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus.

Jacqueline Batley, David Edwards, Soodeh Tirnaz, Sarah V Schiessl, Agnieszka A. Golicz, Aria Dolatabadian, Chon-Kit Kenneth Chan, Philipp E. Bayer, Joseph Christopher Pires, Graham J. King, Isobel A P Parkin, Boulos Chalhoub, Rod J Snowdon, Bhavna Hurgobin, Juan J Montenegro-Idrogo, Birgit Samans
2018-10-09

A Mechanism for Genome Size Reduction Following Genomic Rearrangements

Longhui Ren, David John Bertioli
2018-05-15

High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut

Manish K. Pandey, Xingjun Wang, Rupesh K. Deshmukh, Rajeev Kumar Varshney, Baozhu Guo, David J. Bertioli
2017-03-23

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

Olga Dudchenko, Marie Hoeger, Muhammad S Shamim, Ido Machol, Eric Lander, Aviva Presser Aiden, Erez Lieberman Aiden
2017-02-17

Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants

Sophie Lanciano, Marie-Christine Carpentier, Eric Lasserre, Marie Mirouze
2017-03-24

Phenotypic effects of allotetraploidization of wild Arachis and their implications for peanut domestication

Ana Cristina Miranda Brasileiro, David John Bertioli, Márcio C Moretzsohn
2017-09-18

MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads

Chuan-Le Xiao, Shang-Qian Xie, Feng Luo, Zhi Xie
2017-01-16

Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut

Sandip M Kale, Manish K. Pandey, Rajeev Kumar Varshney, Annapurna Chitikineni, David J. Bertioli, Hari D Upadhyaya
2016-08-01

Whole-genome duplication as a key factor in crop domestication

Itay Mayrose
2016-02-22

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

Xin Liu, Brian Scheffler, David John Bertioli, Steven B Cannon, Longhui Ren, Kenta Shirasawa, Chad E Niederhuth, Rajeev Kumar Varshney, Robert Schmitz, Márcio C Moretzsohn
2016-12-16

Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut

Manish K. Pandey, Rajeev Kumar Varshney, Annapurna Chitikineni, David J. Bertioli
2016-11-01

Evidence of Genomic Exchanges between Homeologous Chromosomes in a Cross of Peanut with Newly Synthetized Allotetraploid Hybrids

Brigitte Courtois
2016-05-31

Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens

Xiaojun Zhang, Aamir W Khan, Vanika Garg, Manish K. Pandey, Rajeev Kumar Varshney, Annapurna Chitikineni, Hari D Upadhyaya, Andrew H Paterson
2016-07-01

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Eric Lander, Muhammad S Shamim, Erez Lieberman Aiden, Suhas S.P. Rao
2016-07-01

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

Eric Lander, Jill P. Mesirov, Muhammad S Shamim, Erez Lieberman Aiden
2016-04-04

Near-optimal probabilistic RNA-seq quantification

Lior Pachter, Harold Pimentel, Páll Melsted
2016-09-30

A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea

Brian Scheffler
2015-02-20

Tetrasomic recombination is surprisingly frequent in allotetraploid Arachis

Kenta Shirasawa, David John Bertioli, Márcio C Moretzsohn
2015-04-20

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement.

Brian Scheffler, Amanda M. Hulse-Kemp, Qiong Wang, Jiedan Chen, Chen Xiao-Ya, Danny J Llewellyn, David M. Stelly, Elizabeth S. Dennis, Wangzhen Guo, Tianzhen Zhang
2015-10-08

The wondrous cycles of polyploidy in plants.

Jonathan F. Wendel
2015-02-18

MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing

Ryan Lister, Robert Schmitz, Joseph R. Ecker
2014-08-21

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Adriana Alberti, Ian Bancroft, Graham J. King, Jacqueline Batley, Jorg Tost, France Denoeud, Julien Chiquet, Corinne Da Silva, Jérémy Just, Benjamin Noel, Kamel Jabbari, Meixia Zhao, Imen Mestiri, Philipp E. Bayer, Agnieszka A. Golicz, Christophe Battail, Jean-Marc Aury, David Edwards, Eric Lyons, Joseph Christopher Pires, Isobel A P Parkin, Jinling Meng, Sahana Manoli, Salman Alamery, Yong Pyo Lim, Shengyi Liu, Boulos Chalhoub, Gilles Lassalle, Harry Belcram, Christine H D Sidebottom, Rod J Snowdon, Xinfa Wang, Yongming Zhou, Zhongsong Liu, Patrick P Edger, Christopher Town, Birgit Samans, Dominique Arnaud, Marie-Christine Le Paslier, Smahane Chalabi, Aurélie Bérard, Andrew H Paterson
2014-12-11

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

Eric Lander, Erez Lieberman Aiden, Suhas S.P. Rao
2014-01-21

InterProScan 5: genome-scale protein function classification

Hsin-Yu Chang, Matthew Fraser, Weizhong Li, Hamish McWilliam, Alex Mitchell, Gift Nuka, Sebastien Pesseat, Antony F Quinn, Amaia Sangrador, Maxim Scheremetjew, Siew-Yit Yong, Rodrigo López, Sarah Hunter, Craig McAnulla, John Maslen
2014-01-01

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I Love, Wolfgang Huber, Simon Anders
2013-07-04

The repetitive component of the A genome of peanut (Arachis hypogaea) and its role in remodelling intergenic sequence space since its evolutionary divergence from the B genome

Changsoo Kim, Trude Schwarzacher, Pat Heslop-Harrison, David John Bertioli, Andrew H Paterson
2013-06

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
2013-07-11

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Alexie Papanicolaou, Matthias Lieber, Matthew D. MacManes, Nathalie Pochet, Francesco Strozzi, Nathan T Weeks, Nir Friedman, Aviv Regev, Colin N Dewey
2013-12-04

MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations

Jikai Lei, Shin-Han Shiu, Gaurav D Moghe, Kevin L. Childs, Carolyn Lawrence-Dill, Yanni Sun
2012-11-06

A study of the relationships of cultivated peanut (Arachis hypogaea) and its most closely related wild species using intron sequences and microsatellite markers

David John Bertioli, Márcio C Moretzsohn
2012-05-01

Characterization of active miniature inverted-repeat transposable elements in the peanut genome

Kenta Shirasawa

Article - wd:Q91677108

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