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CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing

author

Yamila N Torres Cleuren

Eivind Valen

2000 -

published in: Nucleic Acids Research

date of publication: 2019-07-01

main subject: CRISPR

Cites articles 31

Date

Title

Authors

2019-04-03

Genetic compensation triggered by mutant mRNA degradation

Carsten T Kuenne, Claudia Gerri, Didier Stainier
2019-03-08

Accurate analysis of genuine CRISPR editing events with ampliCan

James A Gagnon, Eivind Valen
2018-11-07

Predictable and precise template-free CRISPR editing of pathogenic variants
2018-08

CRISPR-guided DNA polymerases enable diversification of all nucleotides in a tunable window
2018-08-01

Selective nanopore sequencing of human BRCA1 by Cas9-assisted targeting of chromosome segments (CATCH)

Yuval Ebenstein
2018-03-15

Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors

Peter Lotfy, Patrick D Hsu
2018-01-29

Deep learning improves prediction of CRISPR-Cpf1 guide RNA activity.

Hyongbum Kim, Jae Woo Choi, Sungroh Yoon, Younggwang Kim
2017-10-25

RNA editing with CRISPR-Cas13

Jonathan S. Gootenberg, Omar O Abudayyeh, David B T Cox, Brian Franklin, Max J Kellner, Feng Zhang
2017-10-04

RNA targeting with CRISPR-Cas13.

Patrick Essletzbichler, Eric Lander, Aviv Regev
2017-04-28

Establishment of expanded and streamlined pipeline of PITCh knock-in - a web-based design tool for MMEJ-mediated gene knock-in, PITCh designer, and the variations of PITCh, PITCh-TG and PITCh-KIKO

Takashi Yamamoto, Shota Nakade, Tetsushi Sakuma
2017-04-13

Nucleic acid detection with CRISPR-Cas13a/C2c2

Eugene Koonin, Jonathan S. Gootenberg, Omar O Abudayyeh, Jeong Wook Lee, Patrick Essletzbichler, Aaron J Dy, Vanessa Verdine, Nichole M Daringer, Catherine A Freije, Cameron Myhrvold, Roby P Bhattacharyya, Jonathan Livny, Aviv Regev, Deborah T Hung, Pardis C. Sabeti, James J. Collins, Feng Zhang
2017-01-04

Cas13b Is a Type VI-B CRISPR-Associated RNA-Guided RNase Differentially Regulated by Accessory Proteins Csx27 and Csx28.

Patrick Essletzbichler, Jonathan S. Gootenberg, Eugene Koonin, Kira Makarova, Sergey A Shmakov, Aaron A Smargon, Neena K Pyzocha, Omar O Abudayyeh, Ian M Slaymaker
2016-11-16

In vivo genome editing via CRISPR/Cas9 mediated homology-independent targeted integration

Pierre Magistretti, Juan Carlos Izpisúa Belmonte, Reyna Hernandez-Benitez, Shicheng Guo
2016-06-10

Internal guide RNA interactions interfere with Cas9-mediated cleavage

Summer B Thyme, Eivind Valen
2016-06-02

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

Eric Lander, Aviv Regev, Jonathan S. Gootenberg, Eugene Koonin, Kira Makarova, Sergey A Shmakov, Omar O Abudayyeh, Leonid Minakhin, Ian M Slaymaker, Julia Joung
2016-05-26

Whole-organism lineage tracing by combinatorial and cumulative genome editing

Marshall Horwitz, Alexander F Schier, Jay Shendure
2016-01-18

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.

Mudra Hegde, Meagan E Sullender, Craig B Wilen, Herbert W. Virgin, David E Root, John G Doench, Robert C Orchard
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MMEJ-assisted gene knock-in using TALENs and CRISPR-Cas9 with the PITCh systems

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2015-11

The New State of the Art: Cas9 for Gene Activation and Repression
2015-08-31

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo

Miguel A Moreno-Mateos, Charles E Vejnar
2015-07-13

Unraveling CRISPR-Cas9 genome engineering parameters via a library-on-library approach

George M. Church
2015-06-10

Sequence determinants of improved CRISPR sgRNA design

Myles Brown, Wei Li
2014

Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs

Peng Huang, James A Gagnon, Eivind Valen, Andrea Pauli
2013-08-27

Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system

Rudolf Jaenisch, Thorold Theunissen, Hui Yang
2013-10

CRISPR RNA-guided activation of endogenous human genes
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RNA-guided gene activation by CRISPR-Cas9-based transcription factors

Pablo Perez-Pinera, Kam W. Leong, Farshid Guilak, Timothy E. Reddy, Andrew F Adler
2013-07-21

DNA targeting specificity of RNA-guided Cas9 nucleases

Patrick D Hsu, Eli J Fine, Xuebing Wu, Thomas J. Cradick
2013-07-18

CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes

Jennifer Doudna, Lei S Qi, Jonathan Weissman, Noam Stern-Ginossar
2013-02-01

Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression

Lei S Qi, Adam Arkin, Jennifer Doudna
2013-02-15

Multiplex genome engineering using CRISPR/Cas systems

Xuebing Wu, Patrick D Hsu
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ViennaRNA Package 2.0

Peter F. Stadler, Ronny Lorenz, Hakim Tafer, Christoph Flamm, Ivo L. Hofacker, Christian Höner zu Siederdissen, Stephan H. Bernhart

Article - wd:Q92149013

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