Inventaire - your friends and communities are your best library

MethylToSNP: identifying SNPs in Illumina DNA methylation array data

author

Alexander Goncearenco

Laura Elnitski

published in: Epigenetics & Chromatin

date of publication: 2019-12-20

Cites articles 28

Date

Title

Authors

2019-02-20

Transcriptional profiling at the DLK1/MEG3 domain explains clinical overlap between imprinting disorders

Walid Abi Habib, Frederic Brioude, Marie-Laure Sobrier, Eloïse Giabicani, Madeleine D Harbison, Agnès Linglart
2018-09-13

DNA hypermethylation and differential gene expression associated with Klinefelter syndrome

Anne Skakkebæk, Søren Vang, Jakob Skou Pedersen, Claus H. Gravholt, Mikkel Wallentin, Anders Bryø Bojesen, Jens M Hertz, Jens Fedder, John Rosendahl Østergaard, Christian Trolle, Morten Muhlig Nielsen, Jakob Hedegaard, Henrik Hornshøj
2018-01-29

Nanopore sequencing and assembly of a human genome with ultra-long reads

Justin O'Grady, Aaron R Quinlan, Matthew Loose, Miten Jain, Thomas A Sasani, Andrew Beggs, Alexander Dilthey, Arang Rhie, Adam Phillippy, Karen H Miga, Sergey Koren
2017-12-01

Dysregulation of Cortical Neuron DNA Methylation Profile in Autism Spectrum Disorder

Antonino Zito, Evan Elliott
2017-03-21

Neuroanatomic, epigenetic and genetic differences in monozygotic twins discordant for attention deficit hyperactivity disorder

Philip Shaw, Frank X Donovan
2016-12-28

Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi

Kasper D. Hansen
2016-12-07

"Gap hunting" to characterize clustered probe signals in Illumina methylation array data

Kasper D. Hansen, Christine Ladd-Acosta, Andrew P. Feinberg
2016-10-24

Comprehensive characterization, annotation and innovative use of Infinium DNA methylation BeadChip probes
2016-10-07

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling

Mitchell G Lawrence, Gail Petuna Risbridger, Clare Stirzaker
2016-05-26

Identification of polymorphic and off-target probe binding sites on the Illumina Infinium MethylationEPIC BeadChip

Andrew McIntosh, Daniel L McCartney, Rosie M Walker, Kathryn L Evans
2015-11-25

Impact of SNPs on methylation readouts by Illumina Infinium HumanMethylation450 BeadChip Array: implications for comparative population studies

Patrycja Daca-Roszak, Aleksandra Pfeifer, Dagmara Rusinek, Barbara Jarząb, Ewa Zietkiewicz, Michał Witt
2015-10-01

A global reference for human genetic variation

Adam Auton, Shane McCarthy, Richard M. Durbin, 1000 Genomes Project
2014-01-28

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

Kasper D. Hansen, Andrew P. Feinberg, Christine Ladd-Acosta, Andrew E Jaffe, Rafael Irizarry, Martin J. Aryee
2014-01-22

Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array

Nick Wong, Zac Chatterton, Christopher M Hovens, Geoff Macintyre
2013-08-01

DNA methylation contributes to natural human variation

Tomas Marques-Bonet, Manel Esteller, Sergi Sayols, Juan Sandoval, Antonio Gomez Moruno, Sebastian Moran, Holger Heyn
2013-05-01

A data-driven approach to preprocessing Illumina 450K methylation array data

Jonathan Mill, Katie Lunnon, Leonard C. Schalkwyk
2013-03-14

Complex patterns of genomic admixture within southern Africa

Linda Hannick, Rae-Anne Hardie, Mitali Mukerji, Indian Genome Variation Consortium, Richard H Glashoff
2013-03-03

Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array

E Magda Price, Allison M Cotton, Carolyn J. Brown, Michael Kobor
2013-01-11

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray

Steven Garcia
2012-09-01

Widespread plasticity in CTCF occupancy linked to DNA methylation

Katherine E Varley, Jason Gertz, Richard Sandstrom
2012-02-09

Population-specificity of human DNA methylation

Michael Kobor
2011-12-01

Ckmeans.1d.dp: Optimal k-means Clustering in One Dimension by Dynamic Programming
2011

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

Yoav Gilad, Roger Pique-Regi, Daniel J Gaffney, Jordana T. Bell, Jonathan K. Pritchard
2010-02-01

Complete Khoisan and Bantu genomes from southern Africa

Anton Nekrutenko, Can Alkan, Jeffrey M. Kidd, Ross Hardison, Aakrosh Ratan, Francesca Chiaromonte, Fangqing Zhao, Webb Miller, James C Mullikin, Elaine Mardis, Nick Patterson, Donna Muzny, Evan E. Eichler, Belinda M Giardine, Stephan C Schuster, Daniela I. Drautz-Moses, Richard Burhans, Cathy Riemer, Richard A Gibbs, Lynne Nazareth
2004-06-01

Role of CTCF binding sites in the Igf2/H19 imprinting control region
2004-01-01

The UCSC Table Browser data retrieval tool
2002-05-16

The human genome browser at UCSC,The Human Genome Browser at UCSC

David Haussler, Terrence S. Furey, Jim Kent
2001-01-01

dbSNP: the NCBI database of genetic variation

Article - wd:Q92157483

Welcome to Inventaire

the library of your friends and communities

learn more