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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

Author

Toby J. Gibson

Desmond G. Higgins

1959 -

Published in: Nucleic Acids Research

Date of publication: December 1, 1997

Language: English

Main subject: sequence alignment

Bibliographic databases:

Cites articles 27

Date

Title

Authors

1987

Progressive sequence alignment as a prerequisite to correct phylogenetic trees
June 1, 1987

Prediction of protein secondary structure and active sites using the alignment of homologous sequences
March 1, 1987

HOMED: a homologous sequence editor
December 15, 1988

CLUSTAL: a package for performing multiple sequence alignment on a microcomputer
December 1, 1988

A flexible method to align large numbers of biological sequences
January 1, 1990

Automatic generation of primary sequence patterns from sets of related protein sequences
January 1, 1990

ALMA, an editor for large sequence alignments
1991

Database of homology-derived protein structures and the structural meaning of sequence alignment
1991

A workbench for multiple alignment construction and analysis
March 1, 1991

Motif recognition and alignment for many sequences by comparison of dot-matrices
April 1, 1991

SOMAP: a novel interactive approach to multiple protein sequences alignment
April 1992

CLUSTAL V: improved software for multiple sequence alignment
December 1, 1992

MALIGNED: a multiple sequence alignment editor
June 1, 1992

A new approach for displaying identities and differences among aligned amino acid sequences
June 1992

Evolutionary divergence plots of homologous proteins
October 1, 1993

Weighting in sequence space: a comparison of methods in terms of generalized sequences
December 1, 1993

Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation
December 1, 1993

DCSE, an interactive tool for sequence alignment and secondary structure research
November 1, 1994

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

,
February 1, 1994

Improved sensitivity of profile searches through the use of sequence weights and gap excision
November 1, 1994

Amino acid substitution during functionally constrained divergent evolution of protein sequences
November 1, 1994

Position-based sequence weights
July 15, 1996

PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames
April 1, 1996

SAGA: sequence alignment by genetic algorithm

,
December 13, 1996

Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments
December 1996

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
January 1, 1996

Using CLUSTAL for multiple sequence alignments

Article -

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