Inventaire - your friends and communities are your best library - Inventaire

Insights from genomics into bacterial pathogen populations

published in: PLOS Pathogens

date of publication: 2012-09-01

language: English

main subject: bacteria, virulence, genomics

Cites articles 77

Date

Title

Authors

2012-04

Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

Julian Parkhill, David A Lewis, Simon R Harris, Arjen Speksnijder, Martin J Holland, Anthony W Solomon, Cécile Bébéar, Ian N. Clarke, Nicholas Thomson, David Mabey, Magnus Unemo, Brian Spratt, Rosanna W Peeling, Helena Seth-Smith
2012

A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance

Mark H. Wilcox, Paolo Piazza, Elizabeth M Batty, Tanya Golubchik, David Eyre, Xavier Didelot, Daniel Wilson, Ann Sarah Walker, Derrick W Crook, Tim Peto, Angela Kearns, Rory J Bowden, J Peter Donnelly, Claire L Gordon
2012-06-01

Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak

Julian Parkhill, Mandy Sanders, Claire Chewapreecha, Claudio U Köser, Simon R Harris, Mark Enright, Li Yang Hsu, Sharon Peacock, Stephen D Bentley, Gordon Dougan, Nicholas J Croucher, Matthew J Ellington, Jason R Betley, Amanda L Ogilvy-Stuart
2012-03-05

Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease

Richard G Everitt, Bernadette C Young, Elizabeth M Batty, Tanya Golubchik, Zamin Iqbal, Xavier Didelot, Peter Donnelly, Derrick W Crook, Tim Peto, Rory J Bowden, Rosalind M Harding, Antonina A Votintseva, Kyle Knox, Hanna Larner-Svensson, Heather Godwin, Rowena Fung
2012-03-03

Fourteen years in resistance
2012-02-07

High-resolution single nucleotide polymorphism analysis distinguishes recrudescence and reinfection in recurrent invasive nontyphoidal Salmonella typhimurium disease

Julian Parkhill, Melita A. Gordon, Michael Andrew Quail, Gordon Dougan, Robert A Kingsley, Nicholas A Feasey, Chinyere K. Okoro
2012-01-29

Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event

Thien Ho, Tanya Golubchik, Eleni Giannoulatou, Angela B Brueggemann, Peter Donnelly, Derrick W Crook, Tim Peto, Rory J Bowden, Rosalind M Harding, Chris C A Spencer, Teresa L Street, Robert E Gertz
2012-01-08

De novo assembly and genotyping of variants using colored de Bruijn graphs

Paul Flicek, Gilean McVean, Isaac Turner, Zamin Iqbal
2012-01-01

Insights into antibiotic resistance through metagenomic approaches

Robert A Edwards
2012-04-01

In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids

Jillian Banfield, Vincent J Denef
2011-10-27

A draft genome of Yersinia pestis from victims of the Black Death

Johannes Krause, Hendrik N. Poinar, Sharon N. DeWitte, Brian K Coombes, Joseph B McPhee, Kirsten I Bos, James W. Wood, Hernán A. Burbano, Sarah Schmedes, Verena J Schuenemann, David J D Earn, Geoffrey Brian Golding, Peter Bauer, D. Ann Herring, Matthias Meyer, Nicholas Waglechner
2011-07-27

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany

Jakob Frimodt-Møller, Andreas Munk Petersen, Flemming Scheutz, Karen A. Krogfelt, James P Nataro, Nadia Boisen, Robert Sebra, Andrew Kasarskis, David R Rank, Eric E Schadt, Matthew Waldor
2011-08-25

Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4

Antoine Danchin, Jun Wang, Nicholas J. Loman, Ruifu Yang, Yang Huanming, Kat Holt
2011-04-28

Probable zoonotic leprosy in the southern United States

Sylvain Brisse, Philippe Busso, Stewart Cole, Pushpendra Singh, Alberto Paniz-Mondolfi
2011-01-06

The origin of the Haitian cholera outbreak strain

Yoshiharu Yamaichi, Andrew Kasarskis, Stephen B Calderwood, Eric E Schadt, Matthew Waldor
2011-06

Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

Gerton Lunter
2011-02-01

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak

Robert A. Holt, Inanc Birol, Steven Jones, Fiona Brinkman, Patrick Tang, Victoria J. Cook, Jennifer L. Gardy
2011-01-28

Rapid pneumococcal evolution in response to clinical interventions
2011-11-01

Lessons learned during public health response to cholera epidemic in Haiti and the Dominican Republic

Jordan W Tappero, Robert V. Tauxe
2011-11-13

Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes

Damien Roux, Gregory Priebe, Roy Kishony
2011-11-09

The emerging NDM carbapenemases

Timothy R. Walsh, Laurent Poirel, Patrice Nordmann, David M. Livermore
2011-10-27

Rates of mutation and host transmission for an Escherichia coli clone over 3 years

Peter R Reeves, Ruiting Lan, James R Johnson, Zhemin Zhou
2011-09-02

Adaptive evolution of Staphylococcus aureus during chronic endobronchial infection of a cystic fibrosis patient

Kate Templeton
2011-08-24

Evidence for several waves of global transmission in the seventh cholera pandemic

Thomas R. Connor, Julian Parkhill, Dong Wook Kim, Simon R Harris, Nicholas Thomson, Jan Holmgren, John Clemens, Gordon Dougan, Jongsik Chun, Michael Lebens, Nicholas J Croucher, Seon Young Choi, Ankur Mutreja, Cecil Czerkinsky
2011-07-29

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches
2011-04-24

Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection

James Galagan, Marc Lipsitch, Thomas R Ioerger
2011-03-07

Helicobacter pylori genome evolution during human infection

Xavier Didelot, Toni Aebischer, Richard Reinhardt, Thomas F. Meyer, Sebastian Suerbaum
2011-03-07

Distinct signatures of diversifying selection revealed by genome analysis of respiratory tract and invasive bacterial populations

Stephen B Beres, Patrick Shea, Anthony R Flores, Alexandro J Martagón, Juan C Martinez-Gutierrez, Nahuel Fittipaldi, James M Musser, Donald E Low, Barbara M. Willey
2011-01-05

Control of bacterial virulence by AraC-like regulators that respond to chemical signals

Roy M Robins-Browne
2010-12

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

Jacques Ravel, Paul Keim, Peter Lichtner, Ruifu Yang, François Balloux, Nicholas Thomson, Thierry Wirth, Philippe Roumagnac, Thibaut Jombart, Mark Achtman
2010-04

A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence

Paul Keim, Talima Pearson, Jason F Kreisberg, Justin A Boddey, Richard W Titball
2010-04-20

Evolutionary dynamics of Clostridium difficile over short and long time scales

Julian Parkhill, Carol Churcher, Gordon Dougan, Andries J van Tonder, Graham Rose, Richard Stabler, Kat Holt, Michael Andrew Quail, Brendan W Wren, Stephen D Bentley, Richard Rance, Craig Corton, Mohammed Sebaihia, Trevor Lawley, Helena Seth-Smith

Article - wd:Q28483539

Welcome to Inventaire

the library of your friends and communities

you are offline