Robert Hoehndorf

educated at: Leipzig University

occupation: researcher, computer scientist

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Articles 138

Date

Title

Authors

2022-02-05

Evaluating semantic similarity methods for comparison of text-derived phenotype profiles

Robert Hoehndorf
2022-04-04

Combining biomedical knowledge graphs and text to improve predictions for drug-target interactions and drug-indications

Mahmut Uludag, Robert Hoehndorf
2022-07-01

Contribution of model organism phenotypes to the computational identification of human disease genes

Sarah M Alghamdi, Paul N. Schofield, Robert Hoehndorf
2022-06-24

DeepGOZero: improving protein function prediction from sequence and zero-shot learning based on ontology axioms

Maxat Kulmanov, Robert Hoehndorf
2022-12-19

mOWL: Python library for machine learning with biomedical ontologies

Maxat Kulmanov, Robert Hoehndorf
2021-07-01

DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web

Maxat Kulmanov, Robert Hoehndorf
2021-08-23

Linking common human diseases to their phenotypes; development of a resource for human phenomics

Georgios V. Gkoutos, Robert Hoehndorf
2021-04-12

Improved characterisation of clinical text through ontology-based vocabulary expansion

Luke T Slater, Robert Hoehndorf
2021-09-27

Multi-faceted semantic clustering with text-derived phenotypes

Luke T Slater, John Williams, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
2021-04-01

Towards similarity-based differential diagnostics for common diseases

Luke T Slater, Andreas Karwath, Robert Hoehndorf, Georgios V. Gkoutos
2021-01-17

A fast, accurate, and generalisable heuristic-based negation detection algorithm for clinical text

Luke T Slater, Robert Hoehndorf, Georgios V. Gkoutos
2020-04-01

Formal axioms in biomedical ontologies improve analysis and interpretation of associated data

Xin Gao, Robert Hoehndorf
2020-02-24

BioHackathon 2015: Semantics of data for life sciences and reproducible research

Rutger Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Atsuko Yamaguchi, Erick Antezana, Jerven Bolleman, Hidemasa U. Bono, Atsushi Fukushima, Kouji Kozaki, Thomas Lütteke, Masaaki Kotera, Attayeb S Mohsen, Núria Queralt Rosinach, Shinya Suzuki, Kieron Taylor, Mark D. Wilkinson, Issaku Yamada, Chih-Hsuan Wei, Michel Dumontier, Tudor Groza, Kevin Bretonnel Cohen, Shuichi Kawashima, Yuki Moriya, Yasunori Yamamoto, Nobuyuki P Aoki, Kazuharu Arakawa, Evan E. Bolton, Hirokazu Chiba, Eric W Deutsch, Jesualdo Tomás Fernández-Breis, Naohisa Goto, Robert Hoehndorf, Navtej Juty, Takeshi Kawashima, Tatsuya Kushida, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Tazro Ohta, Shujiro Okuda, Benedict Paten, Pjotr Prins, Daisuke Shinmachi, Mark Thompson, Ikuo Uchiyama, Toshihisa Takagi
2020-01-01

DeepGOPlus: improved protein function prediction from sequence

Maxat Kulmanov, Robert Hoehndorf
2020-01-13

Combining lexical and context features for automatic ontology extension

Sara Althubaiti, Robert Hoehndorf
2020-04-25

Prediction of novel virus–host interactions by integrating clinical symptoms and protein sequences

Wang Liu-Wei, Senay Kafkas, Jun Chen, Jesper Tegnér, Robert Hoehndorf
2020-06-11

DDIEM: drug database for inborn errors of metabolism

Robert Hoehndorf
2020-07-17

What is the right sequencing approach? Solo VS extended family analysis in consanguineous populations

Ahmed Alfares, Robert Hoehndorf
2020-09-01

EMC10 homozygous variant identified in a family with global developmental delay, mild intellectual disability, and speech delay

Muhammad Umair, Azza Thamer Althagafi, Robert Hoehndorf, Ahmed Alfares, Majid Alfadhel
2020-10-13

Semantic similarity and machine learning with ontologies

Robert Hoehndorf
2020-10-14

Predicting Candidate Genes From Phenotypes, Functions, And Anatomical Site Of Expression

Robert Hoehndorf
2020-11-18

DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier

Maxat Kulmanov, Robert Hoehndorf
2020-12-15

Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies

Luke T Slater, Robert Hoehndorf
2019-02-06

DeepPVP: phenotype-based prioritization of causative variants using deep learning

Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
2019-03-11

Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies

Sarah M Alghamdi, Beth A Sundberg, Paul N. Schofield, Robert Hoehndorf
2019-04-23

DeepGOPlus: Improved protein function prediction from sequence

Robert Hoehndorf
2019-01-24

VSIM: Visualization and simulation of variants in personal genomes with an application to premarital testing

Robert Hoehndorf
2019-01-01

Ontology based text mining of gene-phenotype associations: application to candidate gene prediction

Robert Hoehndorf
2019-06-03

PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research

Maxat Kulmanov, Paul N. Schofield, Robert Hoehndorf
2019-09-18

Ontology based mining of pathogen-disease associations from literature

Senay Kafkas, Robert Hoehndorf
2019-11-19

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Tunca Doğan, Alexandre Renaux, Elaine Zosa, Peter W. Rose, Christophe Dessimoz, Domenico Cozzetto, Michael L Tress, Robert Hoehndorf, Maxat Kulmanov, Martti Tolvanen, Maria-Jesus Martin, Claire O'Donovan, Iddo Friedberg, Giovanni Bosco, Hans Moen, Jeffrey M Yunes, Kimberley A Lewis, Michele Berselli, Alexandra J Lee, Marco Notaro, Farrokh Mehryary, George Georghiou, Alfonso E. Romero, Daniel Barry Roche, Giuseppe Profiti, Marco Frasca, José M. Fernández, Volkan Atalay, Jianlin Cheng, Michal Linial, Rengul Cetin-Atalay, Tapio Salakoski, Damiano Piovesan, Constance J Jeffery, Patricia Babbitt, Alice Carolyn McHardy, Casey S. Greene, David Tudor Jones, Predrag Radivojac, Stefano Toppo, Enrico Lavezzo, Paolo Fontana, Richard Bonneau, Filip Ginter
2019-11-22

Ontology-based prediction of cancer driver genes

Sara Althubaiti, Andreas Karwath, Ashraf Dallol, Katsuhiko Mineta, Andrew Beggs, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf

Human - wd:Q28913647

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