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Applications of genome-scale metabolic reconstructions

author

Matthew A Oberhardt

Bernhard Palsson

1957 -

published in: Molecular Systems Biology

date of publication: 2009-11-03

main subject: biomedical investigative technique

Cites articles 159

Date

Title

Authors

2009

Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens

Derek R. Lovley
2009-06

Comparative genome-scale metabolic reconstruction and flux balance analysis of multiple Staphylococcus aureus genomes identify novel antimicrobial drug targets

Albert-László Barabási, Eivind Almaas, Olaf Wiest
2009

Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction

Bernhard Palsson, Jennifer L. Reed
2009-02

A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189

Costas D. Maranas, John I Glass
2009-02

Reconstruction of biochemical networks in microorganisms
2009-03-01

Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation

Timothy D Scheibe, Derek R. Lovley
2009-08-18

Genome scale reconstruction of a Salmonella metabolic model: comparison of similarity and differences with a commensal Escherichia coli strain
2009-08-03

Development and experimental verification of a genome-scale metabolic model for Corynebacterium glutamicum

Chikara Furusawa, Takashi Hirasawa
2009-07-13

Metabolic network analysis integrated with transcript verification for sequenced genomes

Kourosh Salehi-Ashtiani, Jason A. Papin, Ani Manichaikul, Erik F Y Hom, Ines Thiele, Xinping Yang, Marc Vidal, David E Hill, Ryan McMurray, Lila Ghamsari, Changyu Fan
2009-06-25

iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations
2009-06-12

Understanding the adaptive growth strategy of Lactobacillus plantarum by in silico optimisation

Bas Teusink
2009-04-28

The genetic requirements for fast and slow growth in mycobacteria

Mateu Espasa, Andrzej M. Kierzek, Graham R Stewart, Johnjoe McFadden
2009-04-28

Predicting metabolic biomarkers of human inborn errors of metabolism

Eytan Ruppin
2009-01-26

Genome-scale reconstruction of the metabolic network in Yersinia pestis, strain 91001.

Eivind Almaas
2009-03-25

Connecting extracellular metabolomic measurements to intracellular flux states in yeast

Bernhard Palsson
2009-02-06

Global transcriptional response of Saccharomyces cerevisiae to the deletion of SDH3.

Jens Nielsen, Kiran R Patil, Chiara Schiraldi
2009-02-01

Metabolic flux correlations, genetic interactions, and disease

Joel S. Bader
2009-01-28

Genome-scale constraint-based modeling of Geobacter metallireducens

Jessica E Butler, Derek R. Lovley, Radhakrishnan Mahadevan
2009-01-23

Studies of the production of fungal polyketides in Aspergillus nidulans by using systems biology tools

Jens Nielsen, Mikael Rørdam Andersen, Lisbeth Olsson, , Gianni Panagiotou
2009-01-07

Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii
2009-04-01

Elucidation of metabolism in hybridoma cells grown in fed-batch culture by genome-scale modeling

Iftekhar Karimi, Dong-Yup Lee
2009-06-01

Network-based prediction of metabolic enzymes' subcellular localization

Eytan Ruppin, Asaph Aharoni
2009-04-18

Ensemble modeling for strain development of L-lysine-producing Escherichia coli
2009-04-03

Genome-scale model of Streptococcus thermophilus LMG18311 for metabolic comparison of lactic acid bacteria

Bas Teusink, Willem de Vos
2009-02-27

Essential pathway identification: from in silico analysis to potential antifungal targets in Aspergillus fumigatus

Mikael Rørdam Andersen, Scott E. Baker, Jette Thykaer
2009-02-01

In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network.

Jens Nielsen
2008-12

Spontaneous reaction silencing in metabolic optimization

Takashi Nishikawa, Adilson E. Motter
2008-10-31

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology

Jason A. Papin, Matthew A Oberhardt, Kenneth Nigel Timmis
2008-11

Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network

Aviv Regev, Daphne Koller, Gal Chechik, Oliver J Rando, Jonathan Weissman
2008-10

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

Jens Nielsen, Nicolas Le Novère, Nils Blüthgen, Pedro Mendes, Douglas Kell, Hans Westerhoff, Edda Klipp, Ana Paula Oliveira, Peter Li, Evangelos Simeonidis, Kieran Smallbone, Dina Petranovic, Wolfram Liebermeister, Matthias Heinemann, Warwick Dunn, Michael Hucka, Merja Penttilä, Neil Swainston, Bernhard Palsson, Uwe Sauer, Irena Spasić, Dieter Weichart
2008-09-16

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

Ines Thiele, Bernhard Palsson
2008-09

Progress in metabolic engineering of Saccharomyces cerevisiae

Article - wd:Q29031028

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