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A robust method for transcript quantification with RNA-seq data.

著者

Derek Y Chiang

この作品が含まれる作品: Journal of Computational Biology

出版日: 2013-03-01

main subject: RNAシーケンシング, transcript quantification, RNA-Seq

Cites articles 31

Date

タイトル

著者

2012-01

Ensembl 2012

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2011-12-01

Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation

Jingyi Jessica Li, Peter J. Bickel
2011-09-27

IsoLasso: a LASSO regression approach to RNA-Seq based transcriptome assembly
2011-09-06

SpliceTrap: a method to quantify alternative splicing under single cellular conditions

W. Richard McCombie, エイドリアン・クライナー
2011-08-08

FDM: a graph-based statistical method to detect differential transcription using RNA-seq data

Derek Y Chiang
2011-08-04

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
2011-04-19

Estimation of alternative splicing isoform frequencies from RNA-Seq data

Ion I. Mandoiu, Alexander Zelikovsky
2011-03-16

Improving RNA-Seq expression estimates by correcting for fragment bias

Lior Pachter, John L. Rinn, Cole Trapnell
2011-03-01

Inference of isoforms from short sequence reads
2011-02-10

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads

Ernest Turro, Angela Goncalves, Lachlan Coin, Sylvia Richardson, Alexandra M. Lewin
2010-08-27

MapSplice: accurate mapping of RNA-seq reads for splice junction discovery

Charles M. Perou, Piotr A Mieczkowski, Derek Y Chiang
2010-07-29

A two-parameter generalized Poisson model to improve the analysis of RNA-seq data
2010-06-23

A probabilistic framework for aligning paired-end RNA-seq data

Derek Y Chiang
2010-06-15

rQuant.web: a tool for RNA-Seq-based transcript quantitation

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2010-05-11

Modeling non-uniformity in short-read rates in RNA-Seq data

Jun Li
2010-05

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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2010-05-02

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

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High-throughput quantification of splicing isoforms
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RNA-Seq gene expression estimation with read mapping uncertainty

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Statistical inferences for isoform expression in RNA-Seq
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Gill Bejerano

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