Inventaire - dine venner og fællesskaber er dit bedste bibliotek - Inventaire

Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping-by-sequencing data from natural populations

udgivet i: Molecular Ecology Resources

dato for udgivelse: 2016-10-19

sprog: engelsk

main subject: genotyping

Cites articles 52

Date

Titel

Forfattere

2016-02

Harnessing the power of RADseq for ecological and evolutionary genomics

Gordon Luikart
2016-01-01

Don't throw the baby out with the bathwater: identifying and mapping paralogs in salmonids
2016-04-18

The Atlantic salmon genome provides insights into rediploidization

Ben F Koop, Jason R. Miller, Torfinn Nome, Torgeir R Hvidsten, Arne B Gjuvsland, Magnus D Vigeland, Unni Grimholt, Sissel Jentoft, Dag Inge Våge, Lex Nederbragt, Steven Jones, Inge Jonassen
2016-04-20

Sorting duplicated loci disentangles complexities of polyploid genomes masked by genotyping by sequencing

Morten T Limborg
2016-04-11

Unidirectional diploid-tetraploid introgression among British birch trees with shifting ranges shown by restriction site-associated markers

James S. Borrell, Richard Nichols, Richard Buggs, Igor Kardailsky, Nian Wang
2015-04-02

Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes

William A Cresko, Morten T Limborg, Susan Bassham, Fred W. Allendorf
2015-11-26

Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids

Laura S Kubatko
2015-12-28

Identification of Multiple QTL Hotspots in Sockeye Salmon (Oncorhynchus nerka) Using Genotyping-by-Sequencing and a Dense Linkage Map

Morten T Limborg
2015-02-20

Tetrasomic recombination is surprisingly frequent in allotetraploid Arachis

Kenta Shirasawa, David John Bertioli, Márcio C Moretzsohn
2015-11-25

An integrated linkage map reveals candidate genes underlying adaptive variation in Chinook salmon (Oncorhynchus tshawytscha)

Morten T Limborg, Kerry-Ann Naish, Ryan K Waples
2015-03-11

Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta)

Ryan K Waples
2014-12-01

Trade-offs and utility of alternative RADseq methods: reply to Puritz et al

Brian K Hand, Gordon Luikart
2014

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

Patrick Wincker, Jean-Marc Aury, Corinne Da Silva, Olivier Jaillon, Karine Labadie, Hugues Roest Crollius, Alexandra Louis, Jean-Nicolas Volff, Domitille Chalopin, Delphine Galiana, Yann Guiguen, Frédéric Brunet, Camille Berthelot, Adriana Alberti, Julien Bobe, Christophe Klopp
2014-09-05

Using Mendelian inheritance to improve high-throughput SNP discovery

Nancy Chen, Cristopher V Van Hout, Andrew G. Clark
2014-12-17

Genome-wide patterns of genetic polymorphism and signatures of selection in Plasmodium vivax

Ananias A Escalante
2014-03-05

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
2014-07-21

Comparative mapping between Coho Salmon (Oncorhynchus kisutch) and three other salmonids suggests a role for chromosomal rearrangements in the retention of duplicated regions following a whole genome duplication event

Miyako Kodama, Kerry-Ann Naish
2014-01-02

Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

Ryan K Waples
2014-02-05

Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata).

Cock van Oosterhout, Mark McMullan
2014-10-06

Temporally isolated lineages of pink salmon reveal unique signatures of selection on distinct pools of standing genetic variation

Morten T Limborg, Ryan K Waples
2014-03-07

A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification

Ian A Johnston
2014-09-14

Gene duplication, population genomics, and species-level differentiation within a tropical mountain shrub

Tove H Jorgensen, Nadir Alvarez, Daniel Piñero, Brent C. Emerson, Sergio Zamudio
2014-12-01

Demystifying the RAD fad

Mikhail Matz, Robert J. Toonen, Jesse N. Weber, Daniel I. Bolnick
2013-05-24

Stacks: an analysis tool set for population genomics

William A Cresko, Susan Bassham, Julian Catchen
2013-11-27

Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools

Marc Stift, Barbara K Mable
2013-02-21

Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing

Gordon Luikart, Eric A Johnson, Fred W. Allendorf, Clint C. Muhlfeld
2013-02

Polyploidy and its effect on evolutionary success: old questions revisited with new tools
2012-10-30

Special features of RAD Sequencing data: implications for genotyping

John W Davey, Karim Gharbi, Mark Blaxter
2012-06-08

Reference-free SNP calling: improved accuracy by preventing incorrect calls from repetitive genomic regions

Lingling Zhang
2012-10-29

Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout
2012-12-18

SNP markers and their impact on plant breeding
2012-12-05

The effects of inheritance in tetraploids on genetic diversity and population divergence

Patrick G Meirmans

Artikel - wd:Q31137982

Welcome to Inventaire

dit venne- og fællesskabs bibliotek

vil du vide mere

you are offline