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PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

gepubliceerd in: Bioinformatics

publicatiedatum: 2014-03-05

taal: Engels

belangrijk thema: fylogenie

Cites articles 24

Date

Titel

Auteurs

2013-02-27

Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization
2013-05-24

Stacks: an analysis tool set for population genomics

William A Cresko, Susan Bassham, Julian Catchen
2013-05-07

Inferring phylogeny and introgression using RADseq data: an example from flowering plants (Pedicularis: Orobanchaceae)
2013-01-30

‘Next generation’ biogeography: towards understanding the drivers of species diversification and persistence

Niklaus E. Zimmermann, Christian Lexer, Peter B Pearman, Felix Forest, Nicolas Salamin
2013-05-25

Genotyping-by-sequencing in ecological and conservation genomics

John W Davey
2013-07-13

Identification of SNP markers for inferring phylogeny in temperate bamboos (Poaceae: Bambusoideae) using RAD sequencing

De Zhu Li
2013-04-02

The evolutionary history of Xiphophorus fish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing

Julia C Jones, Paolo Franchini, Manfred Schartl, Axel Meyer
2012-09-01

Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
2012-11-05

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes

Oliver M Selz, Ole Seehausen
2012-04-11

EggLib: processing, analysis and simulation tools for population genetics and genomics
2012-08-25

Genome-wide patterns of divergence and gene flow across a butterfly radiation

Nicola J Nadeau, Chris D Jiggins, Krzysztof M Kozak, John W Davey, Kanchon Dasmahapatra, Camilo Salazar, James Mallet, Mark Blaxter
2012

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species

Heidi S Fisher, Hopi Hoekstra, Jesse N Weber
2012

Inferring phylogenies from RAD sequence data

Corrie Moreau
2012-09-11

Genomic scan for single nucleotide polymorphisms reveals patterns of divergence and gene flow between ecologically divergent species

Celine Caseys, Stefano Castiglione, Christian Lexer
2012-10-12

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

Oliver M Selz, Catherine E Wagner, Ole Seehausen, Salome Mwaiko
2011-08-01

Stacks: building and genotyping Loci de novo from short-read sequences

John Postlethwait, Julian Catchen
2011-08

Testing for ancient admixture between closely related populations

Nick Patterson, David Reich
2011-04-13

Local de novo assembly of RAD paired-end contigs using short sequencing reads

Jessica L Preston, William A Cresko, Eric A Johnson, Susan Bassham
2010-10-01

Search and clustering orders of magnitude faster than BLAST
2010-09-21

Small insertions and deletions (INDELs) in human genomes
2008

Rapid SNP discovery and genetic mapping using sequenced RAD markers

Eric A Johnson, Zachary A Lewis, William A Cresko
2008-11

Mapping short DNA sequencing reads and calling variants using mapping quality scores

Richard M. Durbin, Heng Li, Jue Ruan
2008-08-25

Estimation of nucleotide diversity, disequilibrium coefficients, and mutation rates from high-coverage genome-sequencing projects
2004

MUSCLE: multiple sequence alignment with high accuracy and high throughput

Artike - wd:Q35113428

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