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GrowMatch: an automated method for reconciling in silico/in vivo growth predictions

auteur

Costas D. Maranas

1967 -

gepubliceerd in: PLOS Computational Biology

publicatiedatum: 2009-03-13

belangrijk thema: automatisering

Cites articles 45

Date

Titel

Auteurs

2008-02-12

Predicting synthetic rescues in metabolic networks

Albert-László Barabási, E Almaas, Adilson E. Motter
2008-02-04

Three factors underlying incorrect in silico predictions of essential metabolic genes

Bernhard Palsson
2008-01-24

Predicting biological system objectives de novo from internal state measurements

Jason A Papin, Costas D. Maranas, Erwin P Gianchandani, Matthew A Oberhardt
2008-01

KEGG for linking genomes to life and the environment

Minoru Kanehisa, Masahiro Hattori, Shujiro Okuda, Shuichi Kawashima, Toshiaki Katayama
2008-01

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

Peter D. Karp
2007-06-26

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

Peter D. Karp, Vassily Hatzimanikatis, Bernhard Palsson, Jennifer L Reed, Adam M Feist, Linda J Broadbelt, Christopher S Henry, Markus Krummenacker
2007-02-06

Plasticity of genetic interactions in metabolic networks of yeast

Balázs Papp, Daniela Delneri, Richard Harrison
2007-02-06

Global reconstruction of the human metabolic network based on genomic and bibliomic data

Rohith Srivas, Ines Thiele, Bernhard Palsson
2007-06-20

Optimization based automated curation of metabolic reconstructions

Costas D. Maranas
2006-11-06

Systems approach to refining genome annotation

Bernhard Palsson, Jennifer L Reed
2006-09-29

Experimental and computational assessment of conditionally essential genes in Escherichia coli

Jennifer L Reed, Robert A Edwards, Bernhard Palsson, Hirotada Mori
2006

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Masaru Tomita, Takeshi Ara, Hirotada Mori
2006-06-06

A metabolic network in the evolutionary context: multiscale structure and modularity

Mikhail S Gelfand
2006-03-29

Identifying metabolic enzymes with multiple types of association evidence

George M. Church, Peter V Kharchenko, Dennis Vitkup
2006-02-01

Towards multidimensional genome annotation

Ines Thiele, Bernhard Palsson, Jennifer L Reed
2006-01-03

Essential genes of a minimal bacterium

Hamilton Othanel Smith, Craig Venter, Clyde A Hutchison, Shibu Yooseph, John I Glass, Nacyra Assad-Garcia, Nina Alperovich
2006-01-01

MetaCyc: a multiorganism database of metabolic pathways and enzymes

Peter D. Karp, Markus Krummenacker
2006-01-01

From genomics to chemical genomics: new developments in KEGG

Minoru Kanehisa, Kiyoko F Aoki-Kinoshita, Shuichi Kawashima, Toshiaki Katayama
2006-02-15

Predicting genes for orphan metabolic activities using phylogenetic profiles
2005-11-18

Genome-scale thermodynamic analysis of Escherichia coli metabolism

Vassily Hatzimanikatis, Linda J Broadbelt
2005-08-19

Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotes

Ian T Paulsen, Qinghu Ren
2005-06-01

Identification of essential genes in Streptococcus pneumoniae by allelic replacement mutagenesis
2005-07-01

Homocysteine toxicity in Escherichia coli is caused by a perturbation of branched-chain amino acid biosynthesis

Conor O'byrne
2005-05-24

Regulatory on/off minimization of metabolic flux changes after genetic perturbations

Eytan Ruppin
2005-01-01

EcoCyc: a comprehensive database resource for Escherichia coli

Martin Peralta-Gil, J Collado-Vides, Peter D. Karp, Ian T Paulsen, Socorro Gama-Castro
2004-12-21

Exploring the diversity of complex metabolic networks

Vassily Hatzimanikatis, Linda J Broadbelt
2004-06-14

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

Bernhard Palsson
2004-06-09

A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases

Peter D. Karp
2004-05-01

Integrating high-throughput and computational data elucidates bacterial networks

Jennifer L Reed, Bernhard Palsson
2004-02-01

Genome-wide RNAi analysis of growth and viability in Drosophila cells

Norbert Perrimon, Stefan Haas, M Boutros
2004-01-12

Flux coupling analysis of genome-scale metabolic network reconstructions

Evgeni V. Nikolaev, Costas D. Maranas
2004-01-01

The KEGG resource for deciphering the genome

Minoru Kanehisa, Shuichi Kawashima

Artike - wd:Q33417622

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