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HISAT: a fast spliced aligner with low memory requirements

autore

Steven Salzberg

1960 -

Ben Langmead

pubblicato in: Nature Methods

data di pubblicazione: 2015-03-09

lingua: inglese

Cita articoli 15

Data

Titolo

Autori

2013-11-03

Systematic evaluation of spliced alignment programs for RNA-seq data

Jennifer Harrow, Roderic Guigó i Serra, Tamara Steijger, Pär G Engström, Gregory R Grant, Gunnar Rätsch, Nick Goldman, Paul Bertone, Tim Hubbard, RGASP Consortium
2013-04-09

OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds

Jie Wu, Olga Anczuków, Adrian Robert Krainer
2013

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Harold Pimentel, Steven Salzberg, Cole Trapnell
2012-10-25

STAR: ultrafast universal RNA-seq aligner

Philippe Batut, Thomas R. Gingeras, Alexander Dobin, Mark J P Chaisson
2012-09-07

Modelling and simulating generic RNA-Seq experiments with the flux simulator

Roderic Guigó i Serra, Michael Sammeth
2012-03-01

Personal omics profiling reveals dynamic molecular and medical phenotypes

George I. Mias, Konrad J. Karczewski, Suganthi Balasubramanian, Maeve O'Huallachain, Rajini Haraksingh, Alan P. Boyle, Maria A Blasco, Atul Butte, Michelle Whirl-Carrillo, Mark Bender Gerstein, Michael P. Snyder, Russ Altman, Teri Klein, Lukas Habegger, Ghia Euskirchen, Maya Kasowski, Fabian Grubert
2012-03-04

Fast gapped-read alignment with Bowtie 2

Steven Salzberg, Ben Langmead
2012-03

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Loyal Goff, Steven Salzberg, Lior Pachter, Harold Pimentel, John L. Rinn, Cole Trapnell
2011-09-02

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

Loyal Goff, Magdalena J Koziol, John L. Rinn, Cole Trapnell, Aviv Regev
2011-08-11

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

Steven Salzberg
2011-07-19

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

Angel Pizarro, Gregory R Grant, Eric A. Pierce, Christian J Stoeckert
2011-05-27

Computational methods for transcriptome annotation and quantification using RNA-seq

Cole Trapnell, Manuel Garber, Mitchell Guttman
2010-02-10

Fast and SNP-tolerant detection of complex variants and splicing in short reads
2009-01-25

Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs
2008-05-30

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Barbara J. Wold

Articolo - wd:Q34043398

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