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A rule-based kinetic model of RNA polymerase II C-terminal domain phosphorylation

författare

Jean Beggs

1950 -

publicerad i: Journal of the Royal Society Interface

utgivningsår: 2013-06-26

huvudämne: fosforylering

Refererar artiklar 31

Datum

Titel

Författare

2013-04-12

Specific Interaction of the Transcription Elongation Regulator TCERG1 with RNA Polymerase II Requires Simultaneous Phosphorylation at Ser2, Ser5, and Ser7 within the Carboxyl-terminal Domain Repeat
2012-07-10

The yeast regulator of transcription protein Rtr1 lacks an active site and phosphatase activity
2012-01-01

A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes

Alain R Bataille, Audrey Forest
2011-10-13

Modelling reveals kinetic advantages of co-transcriptional splicing

Jean Beggs
2011-10-17

Rule-based multi-level modeling of cell biological systems

Adelinde Uhrmacher
2011-02-01

New approaches to modeling complex biochemistry

Peter K. Sorger, John Bachman
2010-12-26

Efficient modeling, simulation and coarse-graining of biological complexity with NFsim

James Faeder, Thierry Emonet
2010-11-01

Splicing-dependent RNA polymerase pausing in yeast

Jean Beggs
2010

Scalable rule-based modelling of allosteric proteins and biochemical networks

Peter S Swain
2010-10-25

RiboSys, a high-resolution, quantitative approach to measure the in vivo kinetics of pre-mRNA splicing and 3'-end processing in Saccharomyces cerevisiae

David Barrass, Martin Kos, David Tollervey, Joanna Kufel, Edouard Bertrand, Jean Beggs
2010-10-01

Cross-talk in transcription, splicing and chromatin: who makes the first call?

Jean Beggs
2010-09-12

Gene-specific RNA polymerase II phosphorylation and the CTD code

David D. Pollock, Paul C Megee, Joel H. Graber, David L Bentley
2010-08-29

Chemical-genomic dissection of the CTD code

Juan B Rodríguez-Molina
2009-11-25

Progression through the RNA polymerase II CTD cycle
2009-05-15

TFIIH kinase places bivalent marks on the carboxy-terminal domain of RNA polymerase II.
2009-01-01

Rule-based modeling of biochemical systems with BioNetGen

James Faeder, William S Hlavacek
2009-04-24

Rtr1 is a CTD phosphatase that regulates RNA polymerase II during the transition from serine 5 to serine 2 phosphorylation

Laurence Florens, Amber L. Mosley, Swaminathan Venkatesh, Michael Carey, Michael P. Washburn, Samantha G Pattenden
2009-04-03

Internal coarse-graining of molecular systems
2009-03-27

Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters
2008-05-03

Cracking the RNA polymerase II CTD code
2007-02

Role for the Ssu72 C-terminal domain phosphatase in RNA polymerase II transcription elongation
2005-11-21

Fcp1 directly recognizes the C-terminal domain (CTD) and interacts with a site on RNA polymerase II distinct from the CTD.

Stewart Shuman
2004-12-01

Expanding the functional repertoire of CTD kinase I and RNA polymerase II: novel phosphoCTD-associating proteins in the yeast proteome
2004-05-07

Ssu72 Is an RNA polymerase II CTD phosphatase
2004-03-26

C-terminal repeat domain kinase I phosphorylates Ser2 and Ser5 of RNA polymerase II C-terminal domain repeats

Justin A. MacDonald
2004-01-09

Dephosphorylation of RNA polymerase II by CTD-phosphatase FCP1 is inhibited by phospho-CTD associating proteins
2004-11-24

Interaction of Fcp1 phosphatase with elongating RNA polymerase II holoenzyme, enzymatic mechanism of action, and genetic interaction with elongator.

Michael Kobor, Jesper Qualmann Svejstrup, Nevan Krogan
2003-08-29

Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends

Jack Greenblatt, Stephen Buratowski
2002-04-04

Characterization of the CTD phosphatase Fcp1 from fission yeast. Preferential dephosphorylation of serine 2 versus serine 5.

Stewart Shuman
2001-12-01

Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain

Michael Kobor
1998-07

Temporal regulation of RNA polymerase II by Srb10 and Kin28 cyclin-dependent kinases

Richard A. Young

Artikel - wd:Q34353791

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