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Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants

autor

Francis Collins

1950 -

Narisu Narisu

2000 -

Brian L Black

Axel Visel

NISC Comparative Sequencing Program

Len A. Pennacchio

2000 -

opublikowano w: Proceedings of the National Academy of Sciences

data publikacji: 2013-10-14

język: język angielski

Cites articles 33

Data

Tytuł

Autorzy

2013-08-01

Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites

Bernhard Schmierer, Inderpreet Sur, Minna Taipale, Martin Enge, Arttu Jolma, Jian Yan
2013-04-01

Selective inhibition of tumor oncogenes by disruption of super-enhancers

Christopher R. Vakoc, Richard A. Young
2013-04-11

Master transcription factors and mediator establish super-enhancers at key cell identity genes
2013-03-01

Cohesin at active genes: a unifying theme for cohesin and gene expression from model organisms to humans

Dale Dorsett, Matthias Merkenschlager
2013-01-17

Genome-wide chromatin state transitions associated with developmental and environmental cues

Tamer T Onder, Deborah M Muoio, David A Bennett, Alexander Meissner, Philip L De Jager, Bradley Bernstein, Chad A. Cowan
2012-12-23

Chromatin marks identify critical cell types for fine mapping complex trait variants

Barbara E. Stranger, Gosia Trynka, Buhm Han
2012-12-05

Integrative annotation of chromatin elements from ENCODE data

Michael M. Hoffman, Steven P Wilder, Ewan Birney, Ian Dunham, Ross Hardison, Anshul Kundaje, Manolis Kellis, William S. Noble
2012-11-08

Interpreting noncoding genetic variation in complex traits and human disease

Lucas D Ward, Manolis Kellis
2012-09

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Mark B. Gerstein, Serafim Batzoglou, Aleksandar Milosavljevic, Lijia Ma, Katherine I Fisher-Aylor, Tao Liu, Michael M. Hoffman, Michael J. Pazin, Anshul Kundaje, Joel Rozowsky, Peggy Farnham, Georgi K Marinov, Jason Gertz, Manolis Kellis, John Stamatoyannopoulos, Peter V Kharchenko, Barbara J. Wold, Michael P. Snyder, Alexander J Hartemink, Jason D Lieb, Bradley Bernstein, Richard M. Myers, Pouya Kheradpour, Philip Cayting, Matthew Slattery, Peter J. Bickel
2012-09-05

Systematic localization of common disease-associated variation in regulatory DNA

Eric Haugen, Richard Sandstrom
2012-09-01

The long-range interaction landscape of gene promoters

Amartya Sanyal, Job Dekker
2012-09-06

An integrated encyclopedia of DNA elements in the human genome

Alvis Brazma, Laurens G Wilming, Toby Hunt, Andrew Berry
2012-05-25

Pharmacogene regulatory elements: from discovery to applications

Nadav Ahituv
2012-03-18

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

Michael M. Hoffman, William S. Noble, Orion J Buske
2012-02-28

ChromHMM: automating chromatin-state discovery and characterization

Manolis Kellis
2012-01-20

Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

Mark B. Gerstein, Barbara J. Wold
2012-01-13

Five years of GWAS discovery

Jian Yang, Matthew A. Brown, Peter M. Visscher, Mark McCarthy
2012-11-01

Mice lacking a Myc enhancer that includes human SNP rs6983267 are resistant to intestinal tumors.

Inderpreet Sur, Jian Yan, Martin Enge, Lauri Aaltonen, Mikko Turunen, Minna Taipale, Anna Vähärautio
2011-04

A user's guide to the encyclopedia of DNA elements (ENCODE)

Alvis Brazma, Toby Hunt, Troy W Whitfield
2011-05-05

Mapping and analysis of chromatin state dynamics in nine human cell types
2011-01

Charting histone modifications and the functional organization of mammalian genomes
2010-11-15

DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail
2010-11-01

Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci

Terrence S. Furey, Francis Collins, Alan P. Boyle, Gregory E. Crawford, Michael Boehnke, NISC Comparative Sequencing Program, Lingyun Song
2010-08-01

From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus

Ludmila Prokunina-Olsson, Vera M Ruda, Michael C. Phillips, Kenechi G. Ejebe, Marju Orho-Melander, Victor Koteliansky, Olle Melander, Eric E Schadt, Chad A. Cowan, James P Pirruccello, Daniel Rader, Kiran Musunuru, Brian Muchmore
2010-08

Discovery and characterization of chromatin states for systematic annotation of the human genome
2010-03-10

A CTCF-independent role for cohesin in tissue-specific transcription

Paul Flicek, Duncan Odom, Petra C Schwalie, Antoni Hurtado
2009-09-28

The human insulin gene is part of a large open chromatin domain specific for human islets

Gary Felsenfeld
2009-06-28

The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling

Rainer Lehtonen, Richard Houlston, Kimmo Palin, Esko Ukkonen, Lauri Aaltonen, Mikko Turunen, Mikael Björklund, Gonghong Wei, Jian Yan, Jukka-Pekka Mecklin, Philip East, Auli Karhu, Heikki Järvinen, Ian Tomlinson
2008-08-04

Gene Ontology term overlap as a measure of gene functional similarity

Paul Pavlidis
2006-04-21

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

Eric Lander, Rudolf Jaenisch, Robert Feil, Kathrin Plath, Marius Wernig, Tarjei S Mikkelsen, Bradley Bernstein, Stuart Schreiber, Michael Kamal, Xiaohui Xie
2004-08-05

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

J. Michael Cherry, Gavin Sherlock
2002-11-01

Locus control regions

Artykuł - wd:Q34377776

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