Yinglong Miao

ocupació: investigador

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Articles 40

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2022-02-24

GLOW: A Workflow Integrating Gaussian-Accelerated Molecular Dynamics and Deep Learning for Free Energy Profiling

Jinan Wang, Yinglong Miao
2022-01-26

An Efficient Gaussian-Accelerated Molecular Dynamics (GaMD) Multilevel Enhanced Sampling Strategy: Application to Polarizable Force Fields Simulations of Large Biological Systems

Yinglong Miao, Jean-Philip Piquemal
2022-01-31

Protein–Protein Interaction-Gaussian Accelerated Molecular Dynamics (PPI-GaMD): Characterization of Protein Binding Thermodynamics and Kinetics

Jinan Wang, Yinglong Miao
2022-07-27

Gaussian Accelerated Molecular Dynamics in OpenMM

Lane W Votapka, Jinan Wang, Rommie E Amaro, Yinglong Miao
2021-09-08

Positive allosteric mechanisms of adenosine A<sub>1</sub> receptor-mediated analgesia

Jinan Wang, Celine Valant, David M Thal, Denise Wootten, Nicolas Panel, Macdonald J Christie, Patrick M. Sexton, Radostin Danev, Yinglong Miao, Alisa Glukhova, Wendy L. Imlach, Arthur Christopoulos, Peter J. Scammells, Christopher J Draper-Joyce, Hariprasad Venugopal, Lauren T May
2020-10-01

Peptide Gaussian accelerated molecular dynamics (Pep-GaMD): Enhanced sampling and free energy and kinetics calculations of peptide binding

Jinan Wang, Yinglong Miao
2019-03-07

Deciphering Off-Target Effects in CRISPR-Cas9 through Accelerated Molecular Dynamics

Yinglong Miao, J. Andrew McCammon, Giulia Palermo, Jennifer Doudna, Janice S Chen
2019-10-10

G-Protein-Coupled Receptor-Membrane Interactions Depend on the Receptor Activation State

Yinglong Miao
2019-07-22

Mechanistic Insights into Specific G Protein Interactions with Adenosine Receptors

Jinan Wang, Yinglong Miao
2018-02-15

Ligand Binding Pathways and Conformational Transitions of the HIV Protease.

Yinglong Miao, J. Andrew McCammon
2018-03-05

Mechanism of the G-protein mimetic nanobody binding to a muscarinic G-protein-coupled receptor.

Yinglong Miao, J. Andrew McCammon
2018-08-01

Acceleration of biomolecular kinetics in Gaussian accelerated molecular dynamics

Yinglong Miao
2018-03-12

Replica Exchange Gaussian Accelerated Molecular Dynamics: Improved Enhanced Sampling and Free Energy Calculation

Yu-Ming M Huang, Yinglong Miao
2018-09-19

Molecular mechanism of off-target effects in CRISPR-Cas9

Yinglong Miao, Martin Jínek, Giulia Palermo, Jennifer Doudna
2017-07-19

Mapping the allosteric sites of the A2A adenosine receptor

Yinglong Miao, Alisha D Caliman
2016-09-09

Striking Plasticity of CRISPR-Cas9 and Key Role of Non-target DNA, as Revealed by Molecular Simulations

Martin Jínek, Giulia Palermo, Yinglong Miao
2016-07-05

Unconstrained Enhanced Sampling for Free Energy Calculations of Biomolecules: A Review

J. Andrew McCammon, Yinglong Miao
2016-09-06

Accelerated structure-based design of chemically diverse allosteric modulators of a muscarinic G protein-coupled receptor

Yinglong Miao, Patrick M. Sexton, Arthur Christopoulos, Celine Valant
2016-10-10

Graded activation and free energy landscapes of a muscarinic G-protein-coupled receptor

Yinglong Miao, J. Andrew McCammon
2016-01-21

General trends of dihedral conformational transitions in a globular protein

Yinglong Miao, J. Andrew McCammon
2016-06-22

G-protein coupled receptors: advances in simulation and drug discovery

Yinglong Miao, J. Andrew McCammon
2016-04-25

Molecular dynamic study of MlaC protein in Gram-negative bacteria: conformational flexibility, solvent effect and protein-phospholipid binding

Yinglong Miao, Victor Nizet, J. Andrew McCammon
2016-12-20

Reactive Center Loop Insertion in α-1-Antitrypsin Captured by Accelerated Molecular Dynamics Simulation

Yinglong Miao, Jan J. Enghild, Birgit Schiøtt
2016-12-14

Ligand Binding in the Extracellular Vestibule of the Neurotransmitter Transporter Homologue LeuT.

Yinglong Miao, Birgit Schiøtt
2016-12-30

Gaussian Accelerated Molecular Dynamics in NAMD.

Yinglong Miao, J. Andrew McCammon
2015-08-11

Gaussian Accelerated Molecular Dynamics: Unconstrained Enhanced Sampling and Free Energy Calculation

Yinglong Miao, J. Andrew McCammon
2015-11-01

Accelerated molecular dynamics simulations of ligand binding to a muscarinic G-protein-coupled receptor

Yinglong Miao, J. Andrew McCammon
2015-06-12

Accelerated molecular dynamics simulations of protein folding

Yinglong Miao, Ferran Feixas, J. Andrew McCammon
2015-04-10

Investigation of the conformational dynamics of the apo A2A adenosine receptor

Yinglong Miao, J. Andrew McCammon
2014-05-01

Improved Reweighting of Accelerated Molecular Dynamics Simulations for Free Energy Calculation

Yinglong Miao, J. Andrew McCammon
2014-01-21

Free energy landscape of G-protein coupled receptors, explored by accelerated molecular dynamics

Yinglong Miao, J. Andrew McCammon
2013-10-30

Mapping of allosteric druggable sites in activation-associated conformers of the M2 muscarinic receptor

J. Andrew McCammon, Yinglong Miao

Human - wd:Q37384564

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