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Decoding neural transcriptomes and epigenomes via high-throughput sequencing

author

Guo-Li Ming

published in: Nature Neuroscience

date of publication: 2014-10-28

language: English

main subject: transcriptome, high-throughput sequencing

Cites articles 147

Date

Title

Authors

2014-02-01

Genome-wide antagonism between 5-hydroxymethylcytosine and DNA methylation in the adult mouse brain

Guo-Li Ming, Hongjun Song, Joo Heon Shin, Keith E Szulwach
2014-02-27

System wide analyses have underestimated protein abundances and the importance of transcription in mammals

Jingyi Jessica Li, Peter J. Bickel
2014-05-18

Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA.

Michiel Vermeulen, Thomas Carell, Markus Müller, Fabio Spada, Primo Schär
2014-02-27

Highly multiplexed subcellular RNA sequencing in situ

Adam H Marblestone, George M. Church, Amy Bernard
2014-10-28

Analytical tools and current challenges in the modern era of neuroepigenomics

Ian S. Maze, Li Shen, Ning-Yi Shao, Charles David Allis
2013-02-20

Effect of chronic heroin and cocaine administration on global DNA methylation in brain and liver

Alexis Bailey
2013-07-04

Global epigenomic reconfiguration during mammalian brain development

Ryan Lister, Eran A. Mukamel, Nicholas D Johnson, Yun Huang, Julian Tonti-Filippini, Holger Heyn, Manel Esteller, Joseph R. Ecker, Joseph C Wu, Anjana Rao, Terrence J. Sejnowski, Jacinta Lucero
2013-12-22

Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain

Guoping Fan, Guo-Li Ming, Hongjun Song, Hongda Li, Jaehoon Shin, Joo Heon Shin
2013-12-27

Distinct DNA methylation patterns of cognitive impairment and trisomy 21 in Down syndrome

Lisa M McEwen, Naznin Virji-Babul, Meaghan J Jones, Michael Kobor
2013-11-18

RNA-sequencing from single nuclei

Marcos J Araúzo-Bravo, Fred Gage, Roger S Lasken, Mark J Novotny
2013-05-19

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

Alex K. Shalek, Schraga Schwartz, Joshua Levin, Aviv Regev, Rahul Satija, Jellert Gaublomme, Nir Hacohen, Nir Yosef, Andreas Gnirke, Alon Goren, John J Trombetta, Rona S Gertner, Raktima Raychowdhury, Xian Adiconis, Dave Gennert, Hongkun Park
2013-07-28

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

Guoping Fan, Zhigang Xue, Qiao Zeng, Steve Horvath
2013-09-25

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

Tim J Stevens, Eitan Yaffe, Wendy Dean, Ernest D. Laue, Peter Fraser, Amos Tanay, Yaniv Lubling
2013-10-31

Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing

Ping Zhu, Xinglong Wu
2013-03-21

Natural RNA circles function as efficient microRNA sponges
2013-04-18

Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming

Peng Liu, Hao Wu, Chun-Xiao Song
2013-09-01

Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues
2013-01-15

In-solution hybrid capture of bisulfite-converted DNA for targeted bisulfite sequencing of 174 ADME genes

Andres Metspalu, Magnus Ingelman-Sundberg, Lili Milani
2013-04-18

Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics

Shinpei Yamaguchi
2013-11-04

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

Albin Sandelin, Casper Shyr, Chih-Yu Chen, Ge Tan, Anthony Mathelier, Boris Lenhard, Wyeth Wasserman
2013-12-15

High-resolution mapping of transcription factor binding sites on native chromatin

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2013-12-08

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification

Myles Brown, Housheng Hansen He, Clifford A. Meyer
2013-10-28

Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands
2012-09-27

Epigenetic mechanisms of depression and antidepressant action

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2012

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2012-09

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2012-09-06

Landscape of transcription in human cells

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2012-03-25

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2012-09

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Article - wd:Q38263227

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