Hana Šimková

languages spoken, written or signed: Czech, English

occupation: researcher, geneticist

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Articles 78

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2021-02-11

A membrane-bound ankyrin repeat protein confers race-specific leaf rust disease resistance in wheat

Markus C Kolodziej, Javier Sánchez-Martín, Hana Šimková, Miroslava Karafiátová, Jaroslav Doležel, Julien Gronnier, Manuel Poretti, Gaetan Glauser, Wangsheng Zhu, Cyril Zipfel, Thomas Wicker, Simon G Krattinger, Beat Keller, Helen Zbinden, Jyoti Singla
2021-07-01

Long-read sequence assembly: a technical evaluation in barley

Martin Mascher, Jerry Jenkins, Thomas Lux, Jennifer Ens, Zuzana Tulpová, Uwe Scholz, Klaus Mayer, Manuel Spannagl, Curtis Pozniak, Andrew G Sharpe, Matthew J Moscou, Jane Grimwood, Jeremy Schmutz, Nils Stein, Heidrun Gundlach, Christopher Plott, Lori B Boston, ChuShin Koh, Thomas Wicker, Hana Šimková
2021-03-18

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

Bernd Hackauf, Martin Mascher, Thomas Lux, Thomas Wicker, Heidrun Gundlach, Andreas Houben, Klaus Mayer, Liangliang Gao, Jesse Poland, Curtis Pozniak, Sean Walkowiak, Joanna Melonek, Coraline Rosalie Praz, Mona Schreiber, Hikmet Budak, Burkhard Steuernagel, Brande Wulff, Andreas Börner, Axel Himmelbach, Beat Keller, Sudharsan Padmarasu, Andrew G Sharpe, Hana Šimková, Ian Small, David Swarbreck, Helena Toegelová, Anatoly V Voylokov, Eva Bauer, Hanna Bolibok, Jaroslav Doležel, Anthony J Hall, Viktor Korzun, Xue-Feng Ma, Hakan Ozkan, Uwe Scholz, Alan H. Schulman, Manuel Spannagl, Nils Stein, Gemy Kaithakottil, Jana Čížková, Matthias Heuberger, Brook Byrns, Jan Vrána, Jizeng Jia, Stefan Stojałowski
2019-09-18

The improved assembly of 7DL chromosome provides insight into the structure and evolution of bread wheat

Hana Šimková, Jaroslav Doležel, Dejun Han, Rudi Appels, David Edwards, Xiaojun Nie, Song Weining, Licao Cui, Kewei Feng, Shancen Zhao, Ming-Cheng Luo, Miroslava Karafiátová, Pingchuan Deng
2018-02-09

Features of the organization of bread wheat chromosome 5BS based on physical mapping.

Jaroslav Doležel, Jan Vrána, Hana Šimková, Jan Safář, Zeev Frenkel, Federica Magni
2018-08-17

Shifting the limits in wheat research and breeding using a fully annotated reference genome

Raj K Pasam, Lorenzo Concia, Philipp E. Bayer, Bala Ani Akpinar, Jean-Marc Aury, Hirokazu Handa, David Edwards, Liangliang Gao, Jens Keilwagen, Richard D Cuthbert, Axel Himmelbach, Jacqueline Batley, Jaroslav Doležel, Jan Vrána, Corinne Cruaud, Bharat Yadav, Matthew Clark, Hana Šimková, Bikram S Gill, Thomas Wicker, Barbora Balcárková, Paul Visendi, Tzion Fahima, Catherine Feuillet, Gary Muehlbauer, Jan Safář, Martin Mascher, Patrick Wincker, Anne-Françoise Adam-Blondon, Kamil Witek, Gabriel Keeble-Gagnère, Beat Keller, Manuel Spannagl, Hadi Quesneville, Curtis Pozniak, Assaf Distelfeld, Marius Felder, Nicolas Guilhot, Philippe Leroy, Sven Twardziok, Boulos Chalhoub, Pierre Sourdille, Benoit Darrier, Jana Čížková, Marie Kubaláková, Sophie Mangenot, Parveen Chhuneja, Darren Heavens, Hiroyuki Kanamori, Satoshi Katagiri, Fuminori Kobayashi, Shuhei Nasuda, Simen R Sandve, Bujie Zhan, Zuzana Tulpová, Licao Cui, Kewei Feng, Xiaojun Nie, Dominique Arnaud, Smahane Chalabi, Kobi Baruch, Abdelhafid Bendahmane, Antje Rohde, Rudi Appels, Frédéric Choulet
2018-11-11

One Major Challenge of Sequencing Large Plant Genomes Is to Know How Big They Really Are

Hana Šimková, Jaroslav Doležel, Jana Čížková
2018-03-08

Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies

Zuzana Tulpová, Paul Visendi, Petr Vojta, Michael Abrouk, Marián Hajdúch, Jacqueline Batley, David Edwards, Hana Šimková
2017-04-27

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L

Jaroslav Doležel, Hana Šimková, Jan Vrána, Rachid Ounit, Stefano Grasso, Sebastian Beier, Cong Tan, Martin Mascher, Thomas Schmutzer, Micha Bayer, Marco Groth, Axel Himmelbach, Paul J. Kersey, Uwe Scholz, Andreas Houben, Alan H. Schulman, Nils Stein, Peter Langridge, Matthew I Bellgard, Matthias Platzer, Robbie Waugh, Chengdao Li, Gary Muehlbauer, Guoping Zhang, Stefan Taudien, Jesse Poland, Marius Felder, Darren Heavens, Qisen Zhang, Roberto A Barrero, Alex R Hastie, Helena Toegelová, María Muñoz-Amatriaín, Steve Wanamaker, Daniel Bolser, Christian Colmsee, Lala Aliyeva-Schnorr, Jaakko Tanskanen, Dharanya Sampath, Sujie Cao, Brett Chapman, Chongyun Lin, John K McCooke, Shuya Yin, Gaofeng Zhou, Sarah Ayling, Mario Caccamo, Timothy J Close, Ilka Braumann
2017-07-01

Physical Map of the Short Arm of Bread Wheat Chromosome 3D.

Jaroslav Doležel, Hana Šimková, Kateřina Holušová, Etienne Paux, Federica Cattonaro, Jan Vrána, Michael Alaux, Zeev Frenkel, Barbora Balcárková, Jan Safář, Benoit Darrier
2017-04-01

A chromosome conformation capture ordered sequence of the barley genome.

Martin Mascher, Sebastian Beier, Rachid Ounit, Andreas Houben, Uwe Scholz, Nils Stein, Stefano Grasso, Cong Tan, Thomas Schmutzer, Micha Bayer, Volodymyr Radchuk, Axel Himmelbach, Marco Groth, Paul J. Kersey, Ljudmilla Borisjuk, Alan H. Schulman, Jaroslav Doležel, Jan Vrána, Matthew Clark, Peter Langridge, Hana Šimková, Thomas Wicker, Matthew I Bellgard, Matthias Platzer, Robbie Waugh, Chengdao Li, Gary Muehlbauer, Guoping Zhang, Anna Chailyan, Manuel Spannagl, Stefan Taudien, Klaus Mayer, Jesse Poland, Heidrun Gundlach, Georg Haberer, Marius Felder, Sven Twardziok, Darren Heavens, Pete E Hedley, Qisen Zhang, Roberto A Barrero, Alex R Hastie, Helena Toegelová, María Muñoz-Amatriaín, Steve Wanamaker, Daniel Bolser, Christian Colmsee, Lala Aliyeva-Schnorr, Jaakko Tanskanen, Dharanya Sampath, Sujie Cao, Brett Chapman, Chongyun Lin, John K McCooke, Shuya Yin, Gaofeng Zhou, Sarah Ayling, Mario Caccamo, Timothy J Close, Ilka Braumann, Penghao Wang
2017-05-15

Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly.

Jaroslav Doležel, Simon G Krattinger, Jan Vrána, Hana Šimková, Thomas Wicker
2016-07

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes

Jacqueline Batley, Marie Kubaláková, Jaroslav Doležel, Hana Šimková, Jan Vrána, Paul Visendi, David Edwards, Mingcheng Luo, Zuzana Tulpová, Alex R Hastie, Helena Toegelová
2016-01-01

Construction of BAC Libraries from Flow-Sorted Chromosomes

Jaroslav Doležel, Hana Šimková, Jan Safář
2016-01-20

An efficient approach to BAC based assembly of complex genomes

Jaroslav Doležel, Hana Šimková, Jacqueline Batley, Paul Visendi, Agnieszka A. Golicz, Chon-Kit Kenneth Chan, Philipp E. Bayer, David Edwards, Helena Toegelová, Pradeep Ruperao, Bhavna Hurgobin, Juan J Montenegro-Idrogo
2016-06-19

The Enigma of Progressively Partial Endoreplication: New Insights Provided by Flow Cytometry and Next-Generation Sequencing

Jaroslav Doležel, Hana Šimková, Eva Hřibová, Kateřina Holušová, Jan Vrána, Jan Ponert
2016-08-11

The in silico identification and characterization of a bread wheat/Triticum militinae introgression line

Jaroslav Doležel, Hana Šimková, Miroslav Valárik, Jan Vrána, Irena Jakobson, Kadri Järve, Michael Abrouk, Barbora Balcárková, Mihaela M Martis, Ljudmilla Timofejeva, Elodie Rey
2016-05-07

Chromosome identification for the carnivorous plant Genlisea margaretae

Jaroslav Doležel, Hana Šimková, Renate H Schmidt, Ingo Schubert
2016-10-10

Flow Analysis and Sorting of Plant Chromosomes.

Jaroslav Doležel, Jan Vrána, Hana Šimková, Jana Čížková, Petr Čáp, Miroslava Karafiátová
2015-08-12

A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B.

Jaroslav Doležel, Hana Šimková, Tsuyoshi Tanaka, Hirokazu Handa, Shigeo Takumi, Jan Safář, Hiroyuki Kanamori, Satoshi Katagiri, Fuminori Kobayashi, Shuhei Nasuda
2015-04-11

Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene

Marie Kubaláková, Jaroslav Doležel, Hana Šimková, Jacqueline Batley, Miroslav Valárik, Nils Stein, David Edwards, Zuzana Tulpová, Helena Toegelová, Ming-Cheng Luo
2015-06-13

The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements

Hélène Bergès, Jaroslav Doležel, Hana Šimková, Federica Cattonaro, Bala Ani Akpinar, Hikmet Budak, Jan Safář, Sonia Vautrin, Federica Magni
2015-08-07

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

Rod A. Wing, Jane Grimwood, Rachid Ounit, Lothar Altschmied, Francesca Cordero, Marco Beccuti, Roger Wise, Nils Stein, Andreas Graner, Jan T Svensson, Hana Šimková, Jaroslav Doležel, Gary Muehlbauer, Shiaoman Chao, Laurel Cooper, Jeremy Schmutz, María Muñoz-Amatriaín, Steve Wanamaker, Timothy J Close, Pascal Condamine, Prasanna Bhat, Frank M You, Matthew J Moscou, Kavitha Madishetty, Josh Resnik, Denisa Duma, Matthew Alpert
2015-11-30

The wheat Sr50 gene reveals rich diversity at a cereal disease resistance locus.

Peter N. Dodds, Hana Šimková, Jaroslav Doležel, Sambasivam Periyannan, Urmil K Bansal, Evans Lagudah, Robert F Park, Sonia Vautrin, Wolfgang Spielmeyer, Rohit Mago, Ming-Cheng Luo, Harbans Bariana, James A Kolmer
2014-12-30

Major haplotype divergence including multiple germin-like protein genes, at the wheat Sr2 adult plant stem rust resistance locus

Marie Kubaláková, Jaroslav Doležel, Hana Šimková, James Breen, Rudi Appels, Sonia Vautrin, Wolfgang Spielmeyer, Xiuying Kong, Rohit Mago
2014-11-26

LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome

Jaroslav Doležel, Hana Šimková, Federica Cattonaro, Jan Vrána, Michele Morgante, Simone Scalabrin
2014-12-09

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications

Marie Kubaláková, Jaroslav Doležel, Hana Šimková, Hikmet Budak, Bala Ani Akpinar
2014-01-07

Advances in plant chromosome genomics

Marie Kubaláková, Jaroslav Doležel, Veronika Burešová, Jan Vrána, Hana Šimková, Petr Čáp
2014-04-05

A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies

Jaroslav Doležel, Jacqueline Batley, Jan Vrána, Paul Visendi, Chon-Kit Kenneth Chan, Teresa Millan, Pooran M Gaur, Karam B. Singh, Rajeev Kumar Varshney, Jun Wang, Hana Šimková, David Edwards, Annapurna Chitikineni, Pradeep Ruperao, Miroslava Karafiátová
2014-06-19

Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A.

Jaroslav Doležel, Klaus Mayer, Nils Stein, Thorsten Schnurbusch, Hana Šimková
2014-02-20

Flow cytometric chromosome sorting from diploid progenitors of bread wheat, T. urartu, Ae. speltoides and Ae. tauschii

Jan Vrána, Jaroslav Doležel, Hana Šimková, Marie Kubaláková, Andras Cseh, Márta Molnár-Láng
2013-12-20

The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution

Hélène Bergès, Jaroslav Doležel, Catherine Feuillet, Etienne Paux, Federica Cattonaro, Beat Keller, Hana Šimková, Thomas Wicker, Philippe Leroy, Zeev Frenkel, Sonia Vautrin, Federica Magni, Tzion Fahima

Human - wd:Q39698963

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