John Westbrook

occupation: researcher

award received: Biocuration Career Award

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Articles 108

Date

Title

Authors

2021-04-01

Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank

John Westbrook, Zukang Feng, Gérard Bricogne, Genji Kurisu, Sameer Velankar, Stephen K Burley, Kiyoko F Aoki-Kinoshita, Issaku Yamada
2020-05-14

The TRUST Principles for digital repositories

Dawei Lin, Jonathan Crabtree, Ingrid Dillo, Robert R Downs, David Giaretta, Marisa Raquel De Giusti, Hervé L'Hours, Wim Hugo, Reyna Jenkyns, Varsha Khodiyar, Maryann E. Martone, Mustapha Mokrane, Vivek Navale, Jonathan Petters, Barbara Sierman, Dina V Sokolova, Martina Stockhause, John Westbrook
2020-11-10

RCSB Protein Data Bank: Architectural advances towards integrated searching and efficient access to macromolecular structure data from the PDB archive

John Westbrook
2020-11-19

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

David Goodsell, John Westbrook, Monica R. Sekharan
2020-12-04

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic

Joseph H Lubin, David Goodsell, John Westbrook, Rebecca Roberts
2020-12-12

RCSB Protein Data Bank 1D Tools and Services

John Westbrook
2020-02-14

Impact of the Protein Data Bank on antineoplastic approvals

John Westbrook
2019-11-25

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures

Paul D. Adams, Christian A Hanke, Gerhard Hummer, Sameer Velankar, Jens Meiler, Juri Rappsilber, John Westbrook, Helen M. Berman, George N Phillips, Thomas E Ferrin
2019-07-05

Archiving and disseminating integrative structure models

John Westbrook, Helen M. Berman
2019-11-29

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

David Goodsell, Christine Zardecki, Luigi Di Costanzo, Jose M. Duarte, Joan Segura, John Westbrook, Jasmine Young, Stephen K Burley
2019-04-08

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

Paul D. Adams, Pavel V Afonine, Kumaran Baskaran, David G Brown, Stephen K Burley, Zukang Feng, Aleksandras Gutmanas, Genji Kurisu, Yuhe Liang, Dorothee Liebschner, Lora Mak, John Markley, Nigel W Moriarty, Garib N Murshudov, Martin Noble, Ezra Peisach, Billy K Poon, Oleg V Sobolev, Sameer Velankar, John Westbrook, Marcin Wojdyr, Jasmine Young, Eugene Krissinel, John M Berrisford, Gérard Bricogne, Yasuyo Ikegawa, Irina Persikova, Eldon L Ulrich, Helen M. Berman
2019-01-01

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

Luigi Di Costanzo, Jasmine Young, David Goodsell, Stephen K Burley, Chunxiao Bi, Jose M. Duarte, Shuchismita Dutta, Rachel Kramer Green, Yuhe Liang, Ezra Peisach, Peter W. Rose, John Westbrook, Huanwang Yang, Christine Zardecki, Helen M. Berman, Cole H. Christie, Andreas Prlić, Chenghua Shao, Yi-Ping Tao, Jesse Woo, Monica R. Sekharan
2018-01-01

Archiving of Integrative Structural Models

Helen M. Berman, John Westbrook
2018-12-27

How Structural Biologists and the Protein Data Bank Contributed to Recent FDA New Drug Approvals

John Westbrook
2018-02-07

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data.

Swanand Gore, John Westbrook, Helen M. Berman, Yasuyo Ikegawa, John Markley, Chenghua Shao, Haruki Nakamura, Jasmine Young, David R Armstrong, Ezra Peisach, John M Berrisford, Ardan Patwardhan, Gerard Kleywegt, Lora Mak, Pieter M.S. Hendrickx, Sanchayita Sen, Irina Persikova, Luigi Di Costanzo, Genji Kurisu, Zukang Feng, Aleksandras Gutmanas, Kumaran Baskaran, Alice R Clark, Dimitris Dimitropoulos, Catherine L. Lawson, Yuhe Liang, Abhik Mukhopadhyay, Eduardo Sanz-García, Glen van Ginkel, Huanwang Yang, Sameer Velankar, Stephen K Burley, Monica R. Sekharan
2018-04-09

Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules.

Helen M. Berman, John Westbrook
2017-03

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

Helen M. Berman, Aleksandras Gutmanas, Glen van Ginkel, Lora Mak, Ezra Peisach, Pieter M.S. Hendrickx, Swanand Gore, Abhik Mukhopadhyay, Ardan Patwardhan, Sameer Velankar, Gerard Kleywegt, Yasuyo Ikegawa, John Markley, Chenghua Shao, Haruki Nakamura, John M Berrisford, Sanchayita Sen, Irina Persikova, Luigi Di Costanzo, Naohiro Kobayashi, Eldon L Ulrich, Zukang Feng, David R Armstrong, John Westbrook, Catherine L. Lawson, Yuhe Liang, Eduardo Sanz-García, Huanwang Yang, Martha Quesada, Stephen K Burley, Monica R. Sekharan
2017-02-06

Fall armyworm migration across the Lesser Antilles and the potential for genetic exchanges between North and South American populations

John Westbrook
2017-02-15

Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive

Jasmine Young, Christine Zardecki, Stephen K Burley, John Westbrook
2017-08-18

2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update

Dina Schneidman-Duhovny, Andrej Šali, John Westbrook, David A. Jacques, Anthony P. Duff, Andrew E Whitten, Frank Gabel, Jill Trewhella, Dmitri Svergun, Ann H Kwan, John A. Tainer, Mitchell Guss
2017-03-28

Correction: Fall armyworm migration across the Lesser Antilles and the potential for genetic exchanges between North and South American populations

John Westbrook
2017-10-25

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education

John Westbrook, Christine Zardecki, Jasmine Young, Stephen K Burley, Helen M. Berman, Cole H. Christie, Zukang Feng
2017-11-13

Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices.

John Westbrook
2017-11-21

Validation of Structures in the Protein Data Bank.

Swanand Gore, Aleksandras Gutmanas, Sameer Velankar, John Westbrook, Lora Mak, Ezra Peisach, John M Berrisford, Ardan Patwardhan, Abhik Mukhopadhyay, Oliver Smart, Catherine L. Lawson, Gerard Kleywegt, Jasmine Young, Helen M. Berman, Zukang Feng, Yasuyo Ikegawa, Huanwang Yang, John Markley, Chenghua Shao, Haruki Nakamura, Sanchayita Sen, Naohiro Kobayashi, Eldon L Ulrich, Martha Quesada, Monica R. Sekharan, Eduardo Sanz-García, Pieter M.S. Hendrickx, Kumaran Baskaran, Stephen K Burley
2017-08-07

Crystallography and Databases

Brian McMahon, Ian J. Bruno, John Westbrook, John R. Helliwell, Saulius Gražulis
2016-02-01

Specification of the Crystallographic Information File format, version 2.0

Brian McMahon, Saulius Gražulis, John Westbrook, Herbert J Bernstein
2016-04-01

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

Evan E. Bolton, Gerard Kleywegt, Randy Read, Andrzej Joachimiak, Wladek Minor, Gérard Bricogne, John Westbrook, Sameer Velankar, Marc C Nicklaus, Thomas C. Terwilliger, Oliver Smart, Stephen K Burley, Jasmine Young, Helen M. Berman, John Spurlino, Gaetano T. Montelione, Huanwang Yang, Zukang Feng, John Markley, Chenghua Shao, Haruki Nakamura, Wolfram Tempel, Tobias Krojer, Paul D. Adams, Alan Mark, Radka Svobodová Vařeková, Anthony Nicholls
2016-02-01

Extension of the sasCIF format and its applications for data processing and deposition

John Westbrook, Dmitri Svergun
2016-10-27

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

Peter W. Rose, John Westbrook, Ezra Peisach, Jose M. Duarte, Stephen K Burley, Helen M. Berman, Chunxiao Bi, David Goodsell, Cole H. Christie, Jesse Woo, Zukang Feng, Chenghua Shao, Yi-Ping Tao, Luigi Di Costanzo, Andreas Prlić, Christopher P. Randle, Shuchismita Dutta, Alexander S Rose
2016-04-18

DCC: a Swiss army knife for structure factor analysis and validation

Ezra Peisach, Jasmine Young, Stephen K Burley, John Westbrook, Helen M. Berman
2016-10-04

Emotional Awareness Moderates the Relationship Between Childhood Abuse and Borderline Personality Disorder Symptom Factors.

John Westbrook
2015-01

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

Helen M. Berman, Andreas Prlić, Christine Zardecki, Shuchismita Dutta, Rachel Kramer Green, Philip Bourne, Wolfgang Bluhm, John Westbrook, Peter W. Rose, Stephen K Burley, Jasmine Young, Chunxiao Bi, David Goodsell, Cole H. Christie, Jesse Woo

Human - wd:Q46330054

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