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Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics.

author

Alexander Loy

Craig Herbold

Bela Hausmann

Michael Pester

Claus Pelikan

published in: Environmental Microbiology

date of publication: 2016-01-26

main subject: bioinformatics, amplicon sequencing

Cites articles 53

Date

Title

Authors

2015-02-17

Accurate multiplexing and filtering for high-throughput amplicon-sequencing

Jan Pawlowski, Philippe Esling, Franck Lejzerowicz
2015-04-27

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

Curtis Huttenhower, Tiffany Hsu, Afrah Shafquat, Xochitl C. Morgan, Eric Franzosa
2015-08-24

Formate, acetate, and propionate as substrates for sulfate reduction in sub-arctic sediments of Southwest Greenland

Clemens Glombitza, Hans Røy, Marit-Solveig Seidenkrantz, B. B. Jørgensen
2015-07-16

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

Craig Herbold, Bela Hausmann, Roey Angel, David Berry, Alexander Loy, Claus Pelikan
2015-08-14

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.

Jed A. Fuhrman
2015-07-09

A Post-Genomic View of the Ecophysiology, Catabolism and Biotechnological Relevance of Sulphate-Reducing Prokaryotes

Sofia Santos Venceslau, Inês Cardoso Pereira
2015-08-04

Primer and platform effects on 16S rRNA tag sequencing

Susannah G Tringe, Tanja Woyke, Julien Tremblay
2015-06-19

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis

Joy D Van Nostrand, Jizhong Zhou, Yujia Qin
2014-09-22

Temperature response of denitrification and anaerobic ammonium oxidation rates and microbial community structure in Arctic fjord sediments.

Gaute Lavik, Markus Huettel, Marcel M M Kuypers
2014-10-24

Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases

Kasper Urup Kjeldsen, Thomas Rattei, Michael Pester, Alexander Loy
2014-04-10

Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys

Hilary G. Morrison, Michael C Nelson, Joerg Graf
2014-03-22

The "bacterial heterodisulfide" DsrC is a key protein in dissimilatory sulfur metabolism

Sofia Santos Venceslau, Christiane Dahl, Inês Cardoso Pereira
2014-03-19

nifH pyrosequencing reveals the potential for location-specific soil chemistry to influence N2 -fixing community dynamics

María Laura Vidoz, Mariano Donato, Jonathan P. Zehr
2013-10

UPARSE: highly accurate OTU sequences from microbial amplicon reads
2013-03-01

Evidence for microbial carbon and sulfur cycling in deeply buried ridge flank basalt.

Olivier Rouxel, Rosalind Coggon, Kai-Uwe Hinrichs, Mark A. Lever, Fumio Inagaki, Marcus Elvert, Andreas Teske, Xavier Prieto-Mollar
2013

phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data

Paul J. McMurdie, Susan P. Holmes
2013-12-19

Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents

Alexander Loy, Júlia R de Rezende, Casey Hubert, Kasper Urup Kjeldsen, Ilias Lagkouvardos, David Berry, Bo Barker Jørgensen
2013-11-08

NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira

Michael Pester, Frank Maixner, David Berry, Thomas Rattei, Sebastian Lücker, Andreas Richter, Alexander Loy, Michael Wagner, Holger Daims, Hanna R Koch, Eva Spieck
2013-01-01

Microbial sulfite respiration.

Jörg Simon
2013-08-23

Effects of Spartina alterniflora invasion on the communities of methanogens and sulfate-reducing bacteria in estuarine marsh sediments

Jemaneh Zeleke
2012-11-28

Microbial pathways in colonic sulfur metabolism and links with health and disease
2012-02-14

PANDAseq: paired-end assembler for illumina sequences

Josh D Neufeld
2012-02-28

Sulfate-reducing microorganisms in wetlands - fameless actors in carbon cycling and climate change

Klaus-Holger Knorr, Michael W. Friedrich, Alexander Loy
2012-11-01

Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

Miriam Land, Nikos C. Kyrpides, Natalia N. Ivanova, Stefan Spring, Alla Lapidus, Hans-Peter Klenk, Roxanne Tapia, Tanja Woyke, Evelyne Brambilla, Thomas Weinmaier, Michael Pester, Alexander Loy, Thomas Rattei, Michael Wagner, Sam Pitluck, Victor Markowitz, Amrita Pati, Jan-Fang Cheng, Konstantinos Mavromatis, Lynne A. Goodwin, Natalia Mikhailova, Loren Hauser, Susan Lucas, Amy Chen, John C Detter, Patrick S Chain, Hajnalka Kiss, Ioanna Pagani, Karen W Davenport, Galina Ovchinnikova, Hazuki Teshima, Cliff Han, Lin Peters, Ernest Szeto
2012-05-03

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes

Elmar Pruesse, Frank Oliver Glöckner
2012-11-22

Zero-valent sulphur is a key intermediate in marine methane oxidation

Gunter Wegener, Michael Wagner, Ingo Lieberwirth, Friedrich Widdel
2011-03-23

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood

Alexandros Stamatakis
2011-05-10

Influence of deglaciation on microbial communities in marine sediments off the coast of Svalbard, Arctic Circle

Yul Roh
2011-12-05

amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

Barbara Reinhold-Hurek, Michael Pester, Alexander Loy, Andreas Richter, Thomas Rattei, Michael Wagner, Jörg Overmann
2011-05-09

Ultra-deep pyrosequencing of pmoA amplicons confirms the prevalence of Methylomonas and Methylocystis in Sphagnum mosses from a Dutch peat bog

Bas E. Dutilh, Levente Bodrossy, Huub J.M. Op den Camp, Mike Jetten
2010-05

QIIME allows analysis of high-throughput community sequencing data

Peter J Turnbaugh, Frederic D. Bushman, Rob Knight, Brian D Muegge, Ruth Ley, Catherine A. Lozupone, Jeffrey I. Gordon, Noah Fierer, J Gregory Caporaso, Daniel McDonald, Kyle Bittinger, Justin Kuczynski, Jesse Stombaugh, Gavin A Huttley, Julia K Goodrich, Dan Knights, William A. Walters, Scott T Kelley, Tanya Yatsunenko, Jesse R Zaneveld
2010-10-01

Search and clustering orders of magnitude faster than BLAST

Article - wd:Q46629740

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