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phylotaR: An Automated Pipeline for Retrieving Orthologous DNA Sequences from GenBank in R.

auteur

Rutger Vos

2000 -

Alexandre Antonelli

1978 -

Dominic J Bennett

Christine D. Bacon

Søren Faurby

gepubliceerd in: Life (Basel, Switzerland)

publicatiedatum: 2018-06-05

belangrijk thema: automatisering, GenBank

Cites articles 23

Date

Titel

Auteurs

2018-03-30

A roadmap for global synthesis of the plant tree of life.

Wolf L. Eiserhardt, Siavash Mirarab, Carsten Rahbek, Brody Sandel, Laura R Botigué, Lisa Pokorny, Tandy Warnow, Brian J. Enquist, William Baker, Felix Forest, Brian S Maitner, Rutger Vos, Ilia J. Leitch, Stephen A. Smith, Alexandre Antonelli, Steven Dodsworth
2018-01-01

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces

Christophe Dessimoz, Adrian M Altenhoff, Klara Kaleb, Alex Warwick Vesztrocy, Karina Zile, Tarcisio M. Farias
2018-01-01

Coalescent-based analyses of genomic sequence data provide a robust resolution of phylogenetic relationships among major groups of gibbons

Cheng-Min Shi
2017-01-07

treeman: an R package for efficient and intuitive manipulation of phylogenetic trees

Samuel T. Turvey
2017-03-01

Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa

Hervé Sauquet, Henrik Nilsson, Christine D. Bacon, Fabien L. Condamine, Alexandre Antonelli, Rutger Vos
2014-11-17

Fast and sensitive protein alignment using DIAMOND
2014-05-01

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis
2013-04

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh
2012-01

GenBank

Ilene Karsch-Mizrachi, David J. Lipman, Dennis A. Benson, Eric W Sayers, James Ostell, Karen Clark
2012-01

The NCBI Taxonomy database

Scott Federhen
2011-06-16

Origin and global diversification patterns of tropical rain forests: inferences from a complete genus-level phylogeny of palms

Thomas Louis Peter Couvreur, William Baker, Felix Forest
2011-03

A molecular phylogeny of living primates

Yves Rumpler, Warren E Johnson, Melody Roelke, Jill Pecon-Slattery, Stephen J. O'brien
2011-01

OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011

Robert M Waterhouse
2010-10-01

Search and clustering orders of magnitude faster than BLAST
2009-04-01

Complete generic-level phylogenetic analyses of palms (Arecaceae) with comparisons of supertree and supermatrix approaches

William Baker, Conny B Asmussen, Vincent Savolainen, Mark Chase, Natalie Whitford Uhl, John Dransfield, Felix Forest
2009

PLAST: parallel local alignment search tool for database comparison
2008-06-01

The PhyLoTA Browser: processing GenBank for molecular phylogenetics research

Darren Boss, Karen Cranston, Andre Wehe
2008

Phylogenetic position of the langur genera Semnopithecus and Trachypithecus among Asian colobines, and genus affiliations of their species groups

Lutz Walter
2005-12-01

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

Nadia Chuzhanova, Andrew J. Weightman, Antonia Jane Jones, Kevin E Ashelford
2005-08-01

Reconstructing the evolutionary history of the Lorisidae using morphological, molecular, and geological data

Andrew Mitchell
2002-03-20

BLAT—The BLAST-Like Alignment Tool
1990-10

Basic local alignment search tool

David J. Lipman, Warren Gish, Stephen Altschul, Eugene Myers, Webb Miller
1988-04-01

Improved tools for biological sequence comparison

David J. Lipman

Artike - wd:Q55669863

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