Tandy Warnow

1955 -

country of citizenship: United States of America

educated at: University of California, Berkeley

occupation: computer scientist, mathematician, university teacher

award received: Guggenheim Fellowship, ISCB Fellow, ACM Fellow, Fellow of the American Association for the Advancement of Science, Packard Fellowship for Science and Engineering

official website: tandy.cs.illinois.edu

Tandy Warnow is an American computer scientist and Grainger Distinguished Chair in Engineering at the University of Illinois at Urbana–Champaign. She is known for her work on the reconstruction of evolutionary trees, both in biology and in historical linguistics, and also for multiple sequence alignment methods. Source: Wikipedia (en)

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Articles 100

Date

Title

Authors

2022-01-01

Why sequence all eukaryotes?

Mark Blaxter, John M Archibald, Anna K. Childers, Jonathan A. Coddington, Keith A. Crandall, Federica Di Palma, Richard M. Durbin, Scott V. Edwards, Jenny Graves, Neil Hall, Rebecca N. Johnson, Elinor K. Karlsson, Shigehiro Kuraku, Kerstin Lindblad-Toh, Jose V. Lopez, Nancy A. Moran, Gene E. Robinson, Oliver A. Ryder, Pamela S. Soltis, Tandy Warnow, Guojie Zhang, Harris A. Lewin, Erich Jarvis, Mara Lawniczak, W. John Kress
2022-01-01

Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue of Taxon Sampling

Paul Zaharias, Tandy Warnow
2020-05-14

Using Constrained-INC for Large-scale Gene Tree and Species Tree Estimation

Tandy Warnow
2020-02-15

Co-citations in context: Disciplinary heterogeneity is relevant

Tandy Warnow, George Chacko
2020-02-10

Correction to: The performance of coalescent-based species tree estimation methods under models of missing data

Tandy Warnow
2020-04-16

Unblended disjoint tree merging using GTM improves species tree estimation

Tandy Warnow
2020-01-04

Non-parametric correction of estimated gene trees using TRACTION

Sarah Christensen, Tandy Warnow
2020-07-01

FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models

Tandy Warnow
2020-07-21

Phylogeny Estimation Given Sequence Length Heterogeneity

Tandy Warnow
2019-05-01

Evaluating Statistical Multiple Sequence Alignment in Comparison to Other Alignment Methods on Protein Data Sets

Tandy Warnow
2019-02-06

Constrained incremental tree building: new absolute fast converging phylogeny estimation methods with improved scalability and accuracy

Tandy Warnow
2019-05-01

Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows

Mihai Pop, Tandy Warnow
2019-07-01

TreeMerge: a new method for improving the scalability of species tree estimation methods

Tandy Warnow
2019-03-01

Long-Branch Attraction in Species Tree Estimation: Inconsistency of Partitioned Likelihood and Topology-Based Summary Methods

Tandy Warnow
2019-07-19

Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge

Erin K Molloy, Tandy Warnow
2019-08-14

Profile Hidden Markov Models are Not Identifiable

Tandy Warnow
2018-01-19

Gene tree parsimony for incomplete gene trees: addressing true biological loss.

Tandy Warnow
2018-02-01

The development and application of bioinformatics core competencies to improve bioinformatics training and education.

Nicola Mulder, Russell Schwartz, Michelle D. Brazas, Gabriella Rustici, Michael Sierk, Sarah L Morgan, Bruno Gaeta, Lonnie R. Welch, Tandy Warnow
2018-03-30

A roadmap for global synthesis of the plant tree of life.

Wolf L. Eiserhardt, Siavash Mirarab, Carsten Rahbek, Brody Sandel, Laura R Botigué, Lisa Pokorny, Tandy Warnow, Brian J. Enquist, William John Baker, Félix Forest, Brian S. Maitner, Rutger Vos, Ilia J. Leitch, Stephen A. Smith, Alexandre Antonelli, Steven Dodsworth
2018-03-09

SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search space.

Tandy Warnow
2018-05-08

SIESTA: enhancing searches for optimal supertrees and species trees.

Tandy Warnow
2018-03-15

OCTAL: Optimal Completion of gene trees in polynomial time.

Sarah Christensen, Erin K Molloy, Tandy Warnow
2018-05-08

The performance of coalescent-based species tree estimation methods under models of missing data.

Tandy Warnow
2018

NJMerge: A Generic Technique for Scaling Phylogeny Estimation Methods and Its Application to Species Trees

Tandy Warnow, Erin K Molloy
2018-11-01

PASTA for proteins

Tandy Warnow
2017-04-14

Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice

Lawrence Mugisha, Julie M. Allen, Tandy Warnow, Kevin P. Johnson
2017-01-25

Phylogenomics from Whole Genome Sequences Using aTRAM.

Lawrence Mugisha, Julie M. Allen, Tandy Warnow, Quentin C. B. Cronk, Kevin P. Johnson, Kayce C. Bell
2017-03-01

FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained exact optimization

Tandy Warnow
2017-09-15

To include or not to include: The Impact of Gene Filtering on Species Tree Estimation Methods.

Tandy Warnow
2016-05-13

Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).

Daniel Mietchen, Russell Schwartz, Predrag Radivojac, Sarah L Morgan, Benjamin L Moore, Gabriella Rustici, William Raymond Pearson, Alastair M. Kilpatrick, Bruno Gaeta, Nicola Mulder, Lonnie R. Welch, Tandy Warnow, Anne Rosenwald, Cath Brooksbank, Mark Pauley, Naomi Rosenberg, Catherine Brooksbank
2016-01-05

The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference

Davide Pisani, Joseph E O'Reilly, Mario Dos Reis, Siavash Mirarab, Benjamin King, Tandy Warnow, Philip Donoghue
2016-11-11

HIPPI: highly accurate protein family classification with ensembles of HMMs

Siavash Mirarab, Tandy Warnow

Human - wd:Q16479

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