Opere relative a Metabarcoding and Metagenomics
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Opere relative a Metabarcoding and Metagenomics 90
- Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, pore size and extraction method
- Dropping Hints: Estimating the diets of livestock in rangelands using DNA metabarcoding of faeces
- Mumame: a software tool for quantifying gene-specific point-mutations in shotgun metagenomic data
- A DNA metabarcoding protocol for hyporheic freshwater meiofauna: Evaluating highly degenerate COI primers and replication strategy
- Assessing pollution of aquatic environments with diatoms’ DNA metabarcoding: experience and developments from France water framework directive networks
- The influence of macroinvertebrate abundance on the assessment of freshwater quality in The Netherlands
- Assessment of species gaps in DNA barcode libraries of non-indigenous species (NIS) occurring in European coastal regions
- Choice of DNA extraction method affects DNA metabarcoding of unsorted invertebrate bulk samples
- Metabarcoding data allow for reliable biomass estimates in the most abundant animals on earth
- Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
- Advancing the use of molecular methods for routine freshwater macroinvertebrate biomonitoring – the need for calibration experiments
- Exploring the potential of metabarcoding to disentangle macroinvertebrate community dynamics in intermittent streams
- Short COI markers for freshwater macroinvertebrate metabarcoding
- Phytool, a ShinyApp to homogenise taxonomy of freshwater microalgae from DNA barcodes and microscopic observations
- Development and evaluation of PCR primers for environmental DNA (eDNA) metabarcoding of Amphibia
- Beyond fish eDNA metabarcoding: Field replicates disproportionately improve the detection of stream associated vertebrate species
- Can metabarcoding resolve intraspecific genetic diversity changes to environmental stressors? A test case using river macrozoobenthos
- Development of a new set of PCR primers for eDNA metabarcoding decapod crustaceans
- Monitoring riverine fish communities through eDNA metabarcoding: determining optimal sampling strategies along an altitudinal and biodiversity gradient
- Read counts from environmental DNA (eDNA) metabarcoding reflect fish abundance and biomass in drained ponds
- Geographic distance and mountain ranges structure freshwater protist communities on a European scalе
- Internal transcribed spacer primer evaluation for vascular plant metabarcoding
- Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison)
- Alignment-free classification of COI DNA barcode data with the Python package Alfie
- The use of citizen science in fish eDNA metabarcoding for evaluating regional biodiversity in a coastal marine region: A pilot study
- A two-step metagenomics approach for the identification and mitochondrial DNA contig assembly of vertebrate prey from the blood meals of common vampire bats (Desmodus rotundus)
- BOLDigger – a Python package to identify and organise sequences with the Barcode of Life Data systems
- Environmental DNA (eDNA) metabarcoding surveys show evidence of non-indigenous freshwater species invasion to new parts of Eastern Europe
- Increasing confidence for discerning species and population compositions from metabarcoding assays of environmental samples: case studies of fishes in the Laurentian Great Lakes and Wabash River
- Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms
- Evaluation of non-destructive DNA extraction protocols for insect metabarcoding: gentler and shorter is better
- The potential of metabarcoding plant components of Malaise trap samples to enhance knowledge of plant-insect interactions
- Assessing the lysis of diverse pollen from bulk environmental samples for DNA metabarcoding
- Towards quantitative metabarcoding of eukaryotic plankton: an approach to improve 18S rRNA gene copy number bias
- Metabarcoding as an effective complement of microscopic studies in revealing the composition of the diatom community – a case study of an oxbow lake of Tisza River (Hungary) with the description of a new Mayamaea species
- The relationship between eDNA density distribution and current fields around an artificial reef in the waters of Tateyama Bay, Japan
- Are microbes growing on flowers evil? Effects of old flower microbes on fruit set in a wild ginger with one-day flowers, Alpinia japonica (Zingiberaceae)
- The bacterial hitchhiker’s guide to COI: Universal primer-based COI capture probes fail to exclude bacterial DNA, but 16S capture leaves metazoa behind
- A strategy for successful integration of DNA-based methods in aquatic monitoring
- National eDNA-based monitoring of Batrachochytrium dendrobatidis and amphibian species in Norway
- A triad of kicknet sampling, eDNA metabarcoding, and predictive modeling to assess richness of mayflies, stoneflies and caddisflies in rivers
- Metagenomic insights to the functional potential of sediment microbial communities in freshwater lakes
- COI amplicon sequence data of environmental DNA collected from the Bronx River Estuary, New York City
- Monitoring harmful microalgal species and their appearance in Tokyo Bay, Japan, using metabarcoding
- Annual dynamics of eukaryotic and bacterial communities revealed by 18S and 16S rRNA metabarcoding in the coastal ecosystem of Sagami Bay, Japan
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