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Ancient pathogen genomics as an emerging tool for infectious disease research

Autor

Maria A Spyrou

Johannes Krause

1980 -

Kirsten I Bos

Alexander Herbig

publikované v: Nature Reviews Genetics

dátum vydania: 2019-06-01

hlavná téma: genomics

Cites articles 183

Date

Názov

Autori

2019-03-01

Model Selection and Parameter Inference in Phylogenetics Using Nested Sampling
2018-12-06

Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline

Nicolas Rascovan, Rasmus Nielsen, Eske Willerslev, Christelle Desnues, Simon Rasmussen, Karl-Göran Sjögren
2018-12-11

Integrative approach using Yersinia pestis genomes to revisit the historical landscape of plague during the Medieval Period

Meriam Guellil, Claudio Ottoni, Sacha Kacki, Barbara Bramanti, Samuel K. Cohn, Nils Christian Stenseth
2018-09-24

Genomic blueprint of a relapsing fever pathogen in 15th century Scandinavia

Meriam Guellil, Oliver Kersten, Barbara Bramanti, Nils Christian Stenseth
2018-08-16

Human plague associated with Tibetan sheep originates in marmots

Wei Li
2018-07-26

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

Zhemin Zhou, Nabil-Fareed Alikhan, Martin Sergeant, Nina Luhmann, Cátia Vaz, Alexandre P Francisco, Joao Andre Carrico, Mark Achtman
2018-07-19

Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia

Sebastian Duchene, Nabil-Fareed Alikhan, Martin Sergeant, Gemma C Langridge, Christopher Quince, Nicholas Thomson, François-Xavier Weill, Marcus Thomas Pius Gilbert, Zhemin Zhou, Simon Y. W. Ho
2018-07-17

Ancient human parvovirus B19 in Eurasia reveals its long-term association with humans

Kristian Kristiansen, Eske Willerslev, Karl-Göran Sjögren, Martin Sikora, Jette Arneborg, Ashot Margaryan, Václav Smrčka, Wiesław Bogdanowicz, Morten Allentoft, Christian Drosten, Ron Fouchier
2018-06-21

Six Whole-Genome Assemblies of Yersinia pestis subsp. microtus bv. ulegeica (Phylogroup 0.PE5) Strains Isolated from Mongolian Natural Plague Foci

Andrey P. Anisimov, Angelina Kislichkina
2018-06-21

Historic Treponema pallidum genomes from Colonial Mexico retrieved from archaeological remains

Aditya Kumar Lankapalli, Rodrigo Barquera Lozano, Elizabeth A. Nelson, Kirsten I Bos, Alexander Herbig, Johannes Krause, Verena J Schuenemann, Víctor Acuña-Alonzo, Lourdes Márquez Morfín
2018-05-25

Phylogeny and Classification of Yersinia pestis Through the Lens of Strains From the Plague Foci of Commonwealth of Independent States

Vladimir Motin
2018-06-08

Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague.

Chuan-Chao Wang, Johannes Krause, Maria A Spyrou, Rezeda Tukhbatova, Alexander Herbig, Kirsten I Bos, Denise Kühnert, Alexander Khokhlov
2018-05-10

Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe

Sonia R. Zakrzewski, Kay Nieselt, Charlotte Avanzi, Ben Krause-Kyora, Alexander Seitz, Alexander Herbig, Sarah Inskip, Dorthe Dangvard Pedersen, Pushpendra Singh, Graham R Stewart, Petr Velemínský, Erika Molnár, Valentina Mariotti, Alessandro Riga, Maria Giovanna Belcastro, Helen D Donoghue, Stewart Cole, Johannes Krause, Verena J Schuenemann, Andrej Benjak, Michael Taylor, Simon Mays, Almut Nebel, Jesper Lier Boldsen, Marion Bonazzi
2018-05-10

Neolithic and medieval virus genomes reveal complex evolution of hepatitis B.

Johannes Krause, Felix M Key, Ben Krause-Kyora, Christoph Rinne, Almut Nebel, Julian Susat, Stefan Schreiber, Sören Franzenburg, Kurt W. Alt, Alexander Herbig, Denise Kühnert, Sandra Lösch, Alexander Immel, Esther Bosse, Sabin-Christin Kornell
2018-05

137 ancient human genomes from across the Eurasian steppes

Martin Sikora, Bazartseren Boldgiv, Eske Willerslev, Karin Margarita Frei, Gabit Baimbetov, Evgeniy Dmitriev, Egor Kitov, Kasper Nielsen, Nurbol Baimukhanov, Nina Marchi, Michaël Peyrot, Karl-Göran Sjögren, Anders Gorm Pedersen, Evelyne Heyer, Kristian Kristiansen, Simon Rasmussen, Ludovic Orlando, Nikolay Kradin, Ashot Margaryan, Václav Smrčka, Valery Loman, J. Víctor Moreno-Mayar, Lotte Hedeager, Almaz A. Aldashev, Levon Yepiskoposyan, Hakon Hakonarson, Thorfinn Korneliussen, Morten Allentoft, Rana Dajani, Karol Pieta, Andrey Gromov, Amy Goldberg, Irina Panyushkina
2018-05

Ancient hepatitis B viruses from the Bronze Age to the Medieval period

Egor Kitov, Martin Sikora, Theron Douglas Price, Kristian Kristiansen, Karl-Göran Sjögren, Bazartseren Boldgiv, Simon Rasmussen, Eske Willerslev, Ludovic Orlando, Ab Osterhaus, Václav Smrčka, Morten Allentoft, Christian Drosten, Ron Fouchier, Barbara Mühlemann, Terry C Jones, Andrey Epimakhov, Vyacheslav Moiseyev, Anders J. Hansen, Derek J Smith
2018-05-01

Ancient DNA study reveals HLA susceptibility locus for leprosy in medieval Europeans.

Michael Nothnagel, Ben Krause-Kyora, Dorthe Dangvard Pedersen, Dmitriy Drichel, Tobias L. Lenz, Almut Nebel, Julian Susat, Stefan Schreiber, Andre Franke, Michael Wittig, Amke Caliebe, Marcel Nutsua, Esther Bosse, Sabin-Christin Kornell
2018-04-05

A genomic overview of the population structure of Salmonella.

Mark Achtman, Nabil-Fareed Alikhan, Martin Sergeant, Zhemin Zhou
2018-02-26

Ancient pathogen DNA in human teeth and petrous bones.

Martin Sikora, Eske Willerslev, Andrey Epimakhov, Simon Rasmussen, Ashot Margaryan, Morten Allentoft, Lehti Saag, Levon Yepiskoposyan
2018-02-27

Language continuity despite population replacement in Remote Oceania

Cosimo Posth, Heidi Colleran, Hallie Buckley, Rebecca Kinaston, Geoffrey R Clark, Christian Reepmeyer, Julia Gresky, Stephen J Oppenheimer, Adrian V. S. Hill, Alexander J Mentzer, Fiona Petchey, Patrick Roberts, Johannes Krause, Adam Powell, Stuart Bedford
2018-01-22

Infectious blood source alters early foregut infection and regurgitative transmission of Yersinia pestis by rodent fleas.

David M Bland
2018-01-18

Nine Whole-Genome Assemblies of Yersinia pestis subsp. microtus bv. Altaica Strains Isolated from the Altai Mountain Natural Plague Focus (No. 36) in Russia.

Andrey P. Anisimov, Angelina Kislichkina
2018-01-16

Human ectoparasites and the spread of plague in Europe during the Second Pandemic.

Boris V. Schmid, Katharine R Dean, Fabienne Krauer, Ole Christian Lingjærde, Nils Christian Stenseth
2018-01-15

Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico

Åshild Vågene, Alexander Herbig, Michael G. Campana, Susanna Sabin, Kirsten I Bos, Johannes Krause, Maria A Spyrou, Nelly M. Robles García, Christina Warinner, Daniel H. Huson, Noreen Tuross
2018-01-04

The paradox of HBV evolution as revealed from a 16th century mummy

Gino Fornaciari, John-Sebastian Eden, Edward C. Holmes, Zoe Patterson Ross, Jennifer Klunk, Valentina Giuffra, Sebastian Duchene, Ana T Duggan, Mark W Douglas, Hendrik N. Poinar
2017-11-20

The Stone Age Plague and Its Persistence in Eurasia.

Felix M Key, Rimantas Jankauskas, Johannes Krause, Wolfgang Haak, Aida Andrades Valtueña, Ivor Janković, Kirsten I Bos, Mario Novak, Michal Feldman, Maria A Spyrou, Alexander Herbig, Anna Szécsényi-Nagy, Alissa Mittnik, Mario Šlaus, Svend Hansen, Philipp W Stockhammer, Raili Allmäe, Mantas Daubaras, Ken Massy, Saskia Pfrengle
2017-10-26

Yersinia pestis strains of ancient phylogenetic branch 0.ANT are widely spread in the high-mountain plague foci of Kyrgyzstan

Galina A Eroshenko
2017-10-12

Possible cases of leprosy from the Late Copper Age (3780-3650 cal BC) in Hungary

Tamás Hajdu, Helen D Donoghue
2017-09-05

Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague

Sandra Telfer, David M Wagner, Crystal M. Hepp, Paul Keim
2017-08-02

Genetic origins of the Minoans and Mycenaeans

Yannis Maniatis, Cosimo Posth, Johannes Krause, Alissa Mittnik, Swapan Mallick, Ron Pinhasi, Alexander Peltzer, John Stamatoyannopoulos, Michael P. Richards, Nick Patterson, David Reich, Nadin Rohland, Kristin Stewardson, Iosif Lazaridis, Daniel M Fernandes, Philipp W Stockhammer, Songül Alpaslan Roodenberg, Saskia Pfrengle, Anastasia Papathanasiou, Anja Furtwängler
2017-07-05

Mining Metagenomic Data Sets for Ancient DNA: Recommended Protocols for Authentication

Felix M Key, Cosimo Posth, Johannes Krause, Kirsten I Bos, Alexander Herbig
2017-04-26

A Robust Framework for Microbial Archaeology

Christina Warinner, James A. Fellows Yates, Allison E. Mann, Johannes Krause, Hernán A. Burbano, Alexander Herbig

Article - wd:Q92887090

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