Inventaire - teman dan komunitas anda adalah perpustakaan terbaik

Best practices for bioinformatic characterization of neoantigens for clinical utility

pengarang

Malachi Griffith

2000 -

Obi Griffith

diterbitkan dalam: Genome Medicine

tanggal publikasi: 2019-08-28

subyek utama: neoplasm antigens, neoplasma, Biologi komputasi

Cites articles 200

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Date

Judul

Pengarang

2020-02-01

neoepiscope improves neoepitope prediction with multivariant phasing

Abhinav Nellore
2019-07-05

Alternative tumour-specific antigens

Christof C Smith, Benjamin G Vincent, Jonathan S. Serody
2019-05-28

MHCSeqNet: a deep neural network model for universal MHC binding prediction

Natapol Pornputtapong, Sira Sriswasdi
2019-05-24

Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

Francesca Finotello, Hubert Hackl, Wilfried Posch, Noel De Miranda, Zlatko Trajanoski, Justin M. Balko, Yaomin Xu, Gerhard T Laschober, Pornpimol Charoentong, Anne M Krogsdam
2019-05-22

NeoPredPipe: high-throughput neoantigen prediction and recognition potential pipeline

Ryan O Schenck
2019-04-23

The combination of neoantigen quality and T lymphocyte infiltrates identifies glioblastomas with the longest survival

Jing Zhang, Jason K Sa
2019-04-16

Attacking Tumors From All Sides: Personalized Multiplex Vaccines to Tackle Intratumor Heterogeneity

Felix L Fennemann
2019-04-22

Immunogenic neoantigens derived from gene fusions stimulate T cell responses

Ken-Wing Lee, Fengshen S. Kuo, Nicolas Robine, Jonathan J Havel, Nadeem Riaz, Timothy A Chan, Luc G T Morris
2019-10-01

ScanNeo: identifying indel-derived neoantigens using RNA-Seq data

Sk. Kayum Alam
2019-01-24

A Synthetic DNA, Multi-Neoantigen Vaccine Drives Predominately MHC Class I CD8+ T-cell Responses, Impacting Tumor Challenge

Niranjan Y Sardesai, David B Weiner
2019-01-23

Identification of candidate neoantigens produced by fusion transcripts in human osteosarcomas

David A Largaespada, Branden S Moriarity, Susan K Rathe, Adrienne Watson
2018-12-19

Neoantigen vaccine generates intratumoral T cell responses in phase Ib glioblastoma trial

J. Bryan Iorgulescu, Aviv Regev, Eric Lander, Patrick Y Wen, Itay Tirosh, Monika Kowalczyk-Domagała, Nir Hacohen, Kenneth J Livak, Phuong M Le, Kai Wucherpfennig, Giacomo Oliveira, Wandi Zhang, Sachet A Shukla, Gad Getz, Derin B Keskin, Donna Neuberg, Annabelle Anandappa, Nathan D Mathewson, Anita Giobbie-Hurder, Christine McCluskey, Ennio Antonio Chiocca, Scott Rodig, Keith L Ligon, Jerome Ritz
2018-12-17

Deep learning using tumor HLA peptide mass spectrometry datasets improves neoantigen identification

Roman Yelensky
2018-12-13

B-cell lymphomas present immunoglobulin neoantigens

Niclas Olsson, Binbin Chen, A Alizadeh
2018-12-01

Noncoding regions are the main source of targetable tumor-specific antigens

Céline M Laumont, Krystel Vincent, Leslie Hesnard, Éric Audemard, Eric Bonneil, Jean-Philippe Laverdure, Patrick Gendron, Mathieu Courcelles, Caroline Côté, Mohamed Benhammadi, Suzanne Vobecky, Elie Haddad, Sébastien Lemieux, Pierre Thibault, Claude Perreault, Marie-Pierre Hardy, Chantal Durette, Joël Lanoix
2018-12-03

Accounting for proximal variants improves neoantigen prediction

Jasreet Hundal, Susanna Kiwala, Yang-Yang Feng, Obi Griffith, Malachi Griffith, Elaine Mardis
2018-11-08

Systematically benchmarking peptide-MHC binding predictors: From synthetic to naturally processed epitopes

Weilong Zhao, Xinwei Sher
2018-10-24

The Immune Epitope Database (IEDB): 2018 update

Alessandro Sette, Bjoern Peters, Swapnil Mahajan, Sandeep Kumar Dhanda, James Overton, Jason R Cantrell, Sheridan Martini, Randi Vita
2018-10-10

Neoantigenic Potential of Complex Chromosomal Rearrangements in Mesothelioma

Enrique M García-Rivera, Wendy K. Nevala
2018-10-05

Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples

Erica K Barnell, Shahil P Pema, Obi Griffith, Arpad M Danos, Malachi Griffith, Alex H Wagner, Zachary L Skidmore, Kilannin Krysiak, Lana M. Sheta
2018-09-24

Acquired cancer resistance to combination immunotherapy from transcriptional loss of class I HLA

Kelly G Paulson, William J. Valente, David M Koelle, Raphael Gottardo, Paul Nghiem
2018-08-28

Heterogeneous mutation pattern in tumor tissue and circulating tumor DNA warrants parallel NGS panel testing

Junlei Wang, JianFeng Chen
2018

Determination of a Predictive Cleavage Motif for Eluted Major Histocompatibility Complex Class II Ligands

Sandeep Kumar Dhanda, Alessandro Sette, Bjoern Peters, Sinu Paul, Vanessa Isabell Jurtz, Edita Karosiene, Lindy Edwards
2018-08-16

Intron retention is a source of neoepitopes in cancer.

Claire A Margolis, Tim Fugmann, Kwok Kin Wong
2018-08

Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

Martin Fassnacht, Thai Huu Ho, Alex Boussioutas, Mohammed Milhem, Gunnar Rätsch, Rui Manuel Reis, James Catto, Karl-Friedrich Becker, Clement Adebamowo, Francesco DiMeco, Eric Lipp, Nyasha Chambwe, Oliver Stegle, David Van Den Berg, Dirk Schadendorf, Thomas C. Smyrk, Nicolas Wentzensen, Nora C Toussaint, Valerie Jakrot, Francisco Sánchez-Vega, Ana C. de Carvalho, Hojabr Kakavand, Aaron Bossler, Roy Tarnuzzer, Christopher M Hovens, Colleen Feltmate, Renumathy Dhanasekaran, Robert A. Holt, Mirella Marino, Richard Scolyer, Andreas von Deimling, Christel Herold-Mende, Cristovam Scapulatempo-Neto, Marc Ladanyi, Matthew Meyerson, Funda Meric-Bernstam, Mark Schiffman, Karel Pacak, Ilya Shmulevich, Darell D. Bigner, Charles M. Perou, Gad Getz, Cyriac Kandoth, Gordon Saksena, Nikolaus Schultz, Stacey Gabriel, Ignacio I Wistuba, Roger E McLendon, Hartwig Huland, Phillip J. DiSaia, W. Kimryn Rathmell, Elaine Mardis, Henrique C Silveira, Eve Shinbrot, Fedor V Moiseyenko, Karan Rai, Deqin Ma, Stefania Cuzzubbo, Alessandro Perin, Agostino M De Rose, Vincenzo Cardinale, Alan H. Bryce, Peter W Laird, Gavin Ha, Hani Gabra, James S Wilmott, Andrew Mungall, Felice Giuliante, Jaffer Ajani, Shannon J. McCall, Ian Anthony Yang, Nicholas Hayward, Gaetano Finocchiaro, Georgina V. Long, Domenico Alvaro, Tom Mikkelsen, Chris Sander, Michael S. Torbenson, Robert Sheridan, Marta Aymerich, Stephen B. Baylin, Rameen Beroukhim, Dawid Murawa, Oliver Kohlbacher, David C Rice, José Humberto Tavares Guerreiro Fregnani, Carlos Gilberto Carlotti, Electron Kebebew, Andrew D Cherniack, Gloria M Petersen, Yussanne Ma, Anne-Marie Mes-Masson, Maciej Wiznerowicz, Donna Muzny, Piotr A Mieczkowski, Fred Saad, Konnor C. La, Kıvanç Birsoy, Jill S. Barnholtz-Sloan, Erwin G. Van Meir, Matthew Bailey, Graham J Mann, Norman L. Lehman, Lisa Scarpace, Rehan Akbani, Howard Colman, Katayoon Kasaian, Brian Patrick O'Neill, Hailei Zhang, Daniel Crain, Kevin Ka-Lun Lau, David Mallery, Joseph Paulauskis, Mark Sherman, Peggy Yena, Jay Bowen, Kristen M. Leraas, Tara M. Lichtenberg, Nilsa C. Ramirez, Lisa Wise-Faberowski, Erik Zmuda, John A. Demchok, Martin Ferguson-Pell, Carolyn M Hutter, Margi Sheth, Heidi J. Sofia, Sudha Chudamani, Todd Pihl, Yunhu Wan, Adrian Ally, James Auman, Saianand Balu, Moiz S. Bootwalla, Reanne Bowlby, Denise S K Brookes, Rebecca Carlsen, Michael D Prados, Jennifer Eschbacher, Mary Iacocca, Raju Kucherlapati, D. Neil Hayes, Paul Spellman, Daniela Pretti da Cunha Tirapelli, Steven Kalkanis, Samantha J. Caesar-Johnson, Ina Felau, Melpomeni Kasapi, Jean C. Zenklusen, Jiashan (Julia) Zhang, Laxmi Lolla, Rashi Naresh, Juok Cho, Timothy DeFreitas, Nils Gehlenborg, Sam Meier, Doug Voet, Varsha Dhankani, Theo A Knijnenburg, Sheila Reynolds, Vesteinn Thorsson, Bradley Broom, Apurva M. Hegde, Rupa S. 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Mural, Stella Somiari, Ales Vicha, Tomáš Zelinka, Brenda Rabeno, Patricia Swanson, Mathieu Latour, Louis Lacombe, Mary McGraw, Susan M. Staugaitis, Hanina Hibshoosh, Antonia R Sepulveda, Olga Voronina, Odette Mariani, Marc-Henri Stern, Sabina Signoretti, Andrew Berchuck, Keith A Delman, Kelly R. Magliocca, Shishir K Maithel, Jeffrey J. Olson, Taofeek K. Owonikoko, Alan Pickens, Suresh S Ramalingam, Gabriel Sica, Wil Eijckenboom, Esther Korpershoek, Leendert Looijenga, Wolter Oosterhuis, Hans Stoop, Kim E. van Kessel, Ellen C Zwarthoff, Chiara Calatozzolo, Lucia Cuppini, Luca Mattei, Bianca Pollo, John C. Houck, Pawadee Lohavanichbutr, Arndt Hartmann, Christine Stoehr, Helge Taubert, Sven Wach, Bernd Wullich, Witold Kycler, W. Jeffrey Edenfield, Julie Martin, Eric Baudin, Glenn Bubley, Assunta De Rienzo, Houtan Noushmehr, Elías Campo, Eva Giné, Armando López-Guillermo, Van Bang Nguyen, Phan Thi Hanh, Yufang Tang, Kimberley J Evason, Peter R. Dottino, John A. 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Landen, Joanna J Phillips, Jeffry Simko, Karen Smith-McCune, Scott Vandenberg, Kevin Roggin, Ashley Fehrenbach, Ady Kendler, Suzanne Sifri, Ian M Forgie, Massimo Mannelli, Michael E Carney, Brenda Y Hernandez, Christin Jungk, Laura Jacobus, Michael Knudson, Tina Knutson, Rita Sigmund, Andrew K Godwin, Rashna Madan, Sally N Adebamowo, David G Beer, Therese Bocklage, Lisa Landrum, Robert K Mannel, Katherine M Moxley, Russel Postier, Joan L Walker, Rosemary Zuna, Federico Galán-Valdivieso, Rajiv Dhir, James Luketich, Edna M. Mora Pinero, Mario Quintero-Aguilo, José Sebastião dos Santos, Rafael Kemp, Ajith Sankarankuty, Kathy Agnew, Elizabeth M Swisher, Jenette Creaney, Carl Simon Shelley, Eryn M. Godwin, Sara Kendall, Cassaundra Shipman, Carol R Bradford, Jeffey Moyer, Lisa M. Colosi, Laura S Rozek, Gregory Wolf, Rayleen Bowman, Kwun M. Fong, Robert Korst, J. Leigh Fantacone-Campbell, Albert J. Kovatich, Craig D Shriver, John DiPersio, Bettina F. 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Update on Tumor Neoantigens and Their Utility: Why It Is Good to Be Different
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