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The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons

author

Lakshminarayan M. Iyer

Aravind L Iyer

Mohan Madan Babu

published in: Nucleic Acids Research

date of publication: 2006

language: English

Cites articles 90

Date

Title

Authors

2006-01-31

Target hub proteins serve as master regulators of development in yeast

Mark Bender Gerstein, Anthony R. Borneman, Paul Bertone, Michael P. Snyder
2006-05-03

Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast

Aravind L Iyer, Lakshminarayan M. Iyer, Mohan Madan Babu
2006-04-27

Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks

Aravind L Iyer, Lakshminarayan M. Iyer, Mohan Madan Babu
2006-05-05

Comparative genomics and structural biology of the molecular innovations of eukaryotes

Aravind L Iyer, Lakshminarayan M. Iyer, Eugene Koonin
2006-03-02

Mechanism of Mos1 transposition: insights from structural analysis

Julia M Richardson, Malcolm Walkinshaw
2006-02-28

Evolutionary dynamics of prokaryotic transcriptional regulatory networks

Sarah Teichmann, Aravind L Iyer, Mohan Madan Babu
2005-07-21

Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains

Lakshminarayan M. Iyer, Aravind L Iyer, Mohan Madan Babu
2005-07-15

The genome of the kinetoplastid parasite, Leishmania major

Marco Marra, André Goffeau, Matthew Berriman, Ann Cronin, Nathalie Bason, Ester Rabbinowitsch, Christiane Hertz-Fowler, Halina Norbertczak, Lee Murphy, Angela Kaysel Cruz, David A. Horn, Alasdair Ivens, Stephen M. Beverley, Christine Clayton, Peter J. Myler, Jeremy C. Mottram, Richard Reinhardt, Michael Andrew Quail, Eithon Cadag, Jerônimo Conceicão Ruiz, Sarah Sharp, David Saunders, Jenefer Blackwell, Guido Volckaert, Elizabeth A Worthey, Gautam Aggarwal, Ellen Sisk, Atashi Anupama, Gholam Fazelina, Alberto C. Frasch, Tin Louie, Siri Nelson, Martin Pentony, Joel Rinta, Amber Seyler, Christy Vogt, Kenneth Stuart, Christopher Peacock, Marie-Adele Rajandream, Ellen C Adlem, Rita Aert, Zina Apostolou, Philip Attipoe, Christopher A Bauser, Gabriella Bianchettin, Katja Borzym, Gordana Bothe, Carlo V Bruschi, Matt Collins, Laura Ciarloni, Richard M R Coulson, Javier G De Gaudenzi, Deborah Dobson, Andreas Duesterhoeft, Nigel Fosker, Audrey Fraser, Claudia Gabel, Arlette Goble, Helmut Hilbert, Sven Klages, Michael Kube, Natasha Larke, Lyudmila Litvin, Angela Lord, David Masuy, Shulamit Michaeli, Silke Müller-Auer, Heather Munden, Karen Oliver, Susan O'neil, Bénédicte Purnelle, Johan Robben, Simon Rutter, Melanie Schäfer, Jacquie Schein, Kathy Seeger, Dhileep Sivam, Rob Squares, Steve Squares, Valentina Tosato, Rolf Wambutt, Tim Warren, Holger Wedler, Shiguo Zhou, Bart Barrell, Claire L Price
2005-05-05

The genome of the social amoeba Dictyostelium discoideum

Arnab Pain, Matthew Berriman, Arnaud Kerhornou, Paul Davis, Ian Goodhead, Christophe Anjard, Gernot Glöckner, Gad Shaulsky, Adam Kuspa, Neil Hall, Carmen Buchrieser, George Weinstock, J A Pachebat, Mohan Madan Babu, Matthias Platzer
2005-03

Solution structure of an Arabidopsis WRKY DNA binding domain

Mikako Shirouzu, Takayoshi Matsuda, Kazuhiko Yamasaki, Kazuo Shinozaki, Shigeyuki Yokoyama, Motoaki Seki, Takanori Kigawa, Masaru Tateno, Tomoko Yamasaki, Takashi Yabuki, Masaaki Aoki, Eiko Seki, Yasuko Tomo, Nobuhiro Hayami, Takaho Terada, Makoto Inoue
2005

The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants
2005-04-01

The many faces of the helix-turn-helix domain: transcription regulation and beyond

Aravind L Iyer, Vivek Anantharaman, Lakshminarayan M. Iyer
2005-04-03

A gene expression map of Arabidopsis thaliana development

Markus Schmid, Detlef Weigel, Jan U. Lohmann, Bernhard Schölkopf
2005-01-01

Transposable elements donate lineage-specific regulatory sequences to host genomes

Leonardo Mariño-Ramírez, David Landsman
2005-02-01

NAC transcription factors: structurally distinct, functionally diverse

Heidi Asschenfeldt Ernst, Leila Lo Leggio, Karen Skriver
2005-02-01

The WRKY family of transcription factors in rice and Arabidopsis and their origins.

Jing Li
2005-07-24

Molecular architecture of a eukaryotic DNA transposase

Li Zhou, L. Q. Zhou
2004-12

Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
2004-12

Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1

Mikako Shirouzu, Takayoshi Matsuda, Kazuhiko Yamasaki, Kazuo Shinozaki, Shigeyuki Yokoyama, Motoaki Seki, Takanori Kigawa, Masaru Tateno, Tomoko Yamasaki, Takashi Yabuki, Masaaki Aoki, Eiko Seki, Yasuko Tomo, Nobuhiro Hayami, Takaho Terada, Takashi Osanai, Makoto Inoue
2004-09-02

Transcriptional regulatory code of a eukaryotic genome

Eric Lander, Nicola J Rinaldi, Jean-Bosco Tagne, Ernest Fraenkel, Manolis Kellis, Julia Zeitlinger, Richard A. Young
2004-06

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

Koichiro Tamura, Sudhir Kumar, Masatoshi Nei
2004

MUSCLE: multiple sequence alignment with high accuracy and high throughput
2004-09-01

Genomic analysis of regulatory network dynamics reveals large topological changes

Sarah Teichmann, Mohan Madan Babu, Mark Bender Gerstein, Michael P. Snyder
2004-09-01

Comparative analysis of apicomplexa and genomic diversity in eukaryotes

Vivek Anantharaman, Aravind L Iyer, Lakshminarayan M. Iyer, Stephen L. Hoffman, Mitchell S. Abrahamsen, Thomas Wesley Templeton
2004-10-01

WRKY transcription factors: from DNA binding towards biological function
2004-06-01

Structure and evolution of transcriptional regulatory networks

Sarah Teichmann, Aravind L Iyer, Mohan Madan Babu, Mark Bender Gerstein
2004-04-01

Evolution of the trans-splicing Drosophila locus mod(mdg4) in several species of Diptera and Lepidoptera
2004-03-01

Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors

Heidi Asschenfeldt Ernst, Leila Lo Leggio
2004-02-01

Evolution of protein superfamilies and bacterial genome size.

Janet Thornton, Christine Orengo, Daniel Buchan, Juan Antonio Garcia-Ranea
2004-04-11

Gene regulatory network growth by duplication.

Sarah Teichmann, Mohan Madan Babu
2004-06-01

DNA binding and in vivo function of C.elegans PEB-1 require a conserved FLYWCH motif
2004-08-19

From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants.

Kimmen Sjölander

Article - wd:Q28764691

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