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A treponemal genome from an historic plague victim supports a recent emergence of yaws and its presence in 15th century Europe

author

Kirsten I Bos

Alexander Herbig

Maria A Spyrou

Karen Giffin

Aditya Kumar Lankapalli

δημοσιεύθηκε στο: Scientific Reports

date of publication: 2020-06-11

main subject: Τροπική μόρωση

Cites articles 63

Date

Title

Authors

2020-01-19

Advancing the understanding of treponemal disease in the past and present

Brenda J Baker, Michael W. Dee, Lesley A. Gregoricka, Maciej Henneberg, Sheila A Lukehart, David Mabey, Charlotte Roberts, Anne Stone
2019-12-16

HOPS: automated detection and authentication of pathogen DNA in archaeological remains

Alexander Herbig, Kirsten I Bos, Johannes Krause, Christina Warinner, Felix M Key, Ron Hübler
2019-10-02

Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes

Maria A Spyrou, Marcel Keller, Christiana L Scheib, Aida Andrades Valtueña, Gunnar U Neumann, Don Walker, Craig Cessford, Michaël Gourvennec, Sarah Inskip, Toomas Kivisild, Sandra Lösch, Alexander Herbig, Kirsten I Bos, Johannes Krause, Dominique Castex, Sacha Kacki, Elizabeth A. Nelson, Felix M Key, Michaela Harbeck, Rezeda Tukhbatova, Amelie Alterauge, Niamh Carty, Kristin von Heyking
2019-06-01

Ancient pathogen genomics as an emerging tool for infectious disease research

Maria A Spyrou, Johannes Krause, Kirsten I Bos, Alexander Herbig
2018-05-10

Neolithic and medieval virus genomes reveal complex evolution of hepatitis B.

Johannes Krause, Felix M Key, Ben Krause-Kyora, Christoph Rinne, Almut Nebel, Julian Susat, Stefan Schreiber, Sören Franzenburg, Kurt W. Alt, Alexander Herbig, Denise Kühnert, Sandra Lösch, Alexander Immel, Esther Bosse, Sabin-Christin Kornell
2018-07-17

Ancient human parvovirus B19 in Eurasia reveals its long-term association with humans

Kristian Kristiansen, Eske Willerslev, Karl-Göran Sjögren, Martin Sikora, Jette Arneborg, Ashot Margaryan, Václav Smrčka, Wiesław Bogdanowicz, Morten Allentoft, Christian Drosten, Ron Fouchier
2018-06-21

Historic Treponema pallidum genomes from Colonial Mexico retrieved from archaeological remains

Aditya Kumar Lankapalli, Rodrigo Barquera Lozano, Elizabeth A. Nelson, Kirsten I Bos, Alexander Herbig, Johannes Krause, Verena J Schuenemann, Víctor Acuña-Alonzo, Lourdes Márquez Morfín
2018-05

Ancient hepatitis B viruses from the Bronze Age to the Medieval period

Egor Kitov, Martin Sikora, T Douglas Price, Kristian Kristiansen, Karl-Göran Sjögren, Bazartseren Boldgiv, Simon Rasmussen, Eske Willerslev, Ludovic Orlando, Ab Osterhaus, Václav Smrčka, Morten Allentoft, Christian Drosten, Ron Fouchier, Barbara Mühlemann, Terry C Jones, Andrey Epimakhov, Vyacheslav Moiseyev, Anders J. Hansen, Derek J Smith
2018-01-15

Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico

Åshild Vågene, Alexander Herbig, Michael G. Campana, Susanna Sabin, Kirsten I Bos, Johannes Krause, Maria A Spyrou, Nelly M. Robles García, Christina Warinner, Daniel H. Huson, Noreen Tuross
2018-09-19

Ratio of mitochondrial to nuclear DNA affects contamination estimates in ancient DNA analysis

Sandra Lösch, Nils Anthes, Johannes Krause, Verena J Schuenemann
2018-09-19

Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium Treponema pallidum subsp. pertenue

Johannes Krause, Kirsten I Bos, Didier Raoult, Anthony Levasseur, Fabian Leendertz, Oleg Mediannikov, Roman M Wittig, Verena J Schuenemann, Georges Diatta, Sascha Knauf, Jan F Gogarten, Emmanuel K. Batamuzi, Idrissa S. Chuma, Robert D. Fyumagwa, Reuben R. Kazwala, Julius D. Keyyu, Inyasi A. V. Lejora, Michael B Mayhew, Lenka Mikalová, David Šmajs
2017-03-08

Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus

Carles Lalueza Fox, Donatella Usai, Sebastian Duchene, Wolfgang Haak, Bastien Llamas, Edward C. Holmes, James Breen, Keith Dobney, Alan J. Cooper, Κατερίνα Χαρβάτη, Antonio Rosas González, Kurt W. Alt, Laura S Weyrich
2017-03-01

Syndemics and the biosocial conception of health

Bayla Ostrach
2017-11-07

Pathogenesis of HIV-1 and Mycobacterium tuberculosis co-infection.

Mahdad Noursadeghi
2017-11-20

The Stone Age Plague and Its Persistence in Eurasia.

Felix M Key, Rimantas Jankauskas, Johannes Krause, Wolfgang Haak, Aida Andrades Valtueña, Ivor Janković, Kirsten I Bos, Mario Novak, Michal Feldman, Maria A Spyrou, Alexander Herbig, Anna Szécsényi-Nagy, Alissa Mittnik, Mario Šlaus, Svend Hansen, Philipp W Stockhammer, Raili Allmäe, Mantas Daubaras, Ken Massy, Saskia Pfrengle
2017-09-08

Complete genome sequences of two strains of Treponema pallidum subsp. pertenue from Ghana, Africa: Identical genome sequences in samples isolated more than 7 years apart

Paolo Tenti, Darina Cejkova, David Šmajs
2017-11-20

Methods for Summarizing Radiocarbon Datasets

Christopher Bronk Ramsey
2016-12-08

17th Century Variola Virus Reveals the Recent History of Smallpox

Ana T Duggan, Maria F Perdomo, Jan P. Buchmann, Sebastian Duchene, Rimantas Jankauskas, Klaus Hedman, Antti Sajantila, Edward C. Holmes, Geoffrey Lilley Smith, Hendrik N. Poinar, John R. Southon, Dario Piombino-Mascali, Stephanie Marciniak
2016-06-01

Historical Y. pestis Genomes Reveal the European Black Death as the Source of Ancient and Modern Plague Pandemics

Johannes Krause, Rezeda Tukhbatova, Alexander Herbig, Kirsten I Bos, Sacha Kacki, Dominique Castex, Maria A Spyrou, Michal Feldman, Susanne M Arnold, Joachim Wahl
2016-04-27

MALT: Fast alignment and analysis of metagenomic DNA sequence data applied to the Tyrolean Iceman

Alexander Herbig, Albert Zink, Kirsten I Bos, Johannes Krause, Daniel H. Huson
2016-03-31

EAGER: efficient ancient genome reconstruction

Kay Nieselt, Johannes Krause, Alexander Peltzer, Alexander Herbig, Alexander Seitz
2016-01-21

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

Johannes Krause, Alexander Herbig, Kirsten I Bos, Mathieu Fourment, Edward C. Holmes, Hendrik N. Poinar, Verena J Schuenemann, Olivier Dutour, Geoffrey Brian Golding, Paul Keim, Jason W Sahl, Nicholas Waglechner, Debi Poinar, Melanie Kuch
2016-12-05

Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster

Natasha Arora, Alexander Peltzer, Leonor Sánchez-Busó, Denise Kühnert, Kirsten I Bos, Sylvia M Bruisten, Marcelo Rodríguez Fermepin, Glaber Arturo Centurion Lara, Lorenzo Giacani, Philipp P Bosshard, Fernando González-Candelas, Johannes Krause, Verena J Schuenemann, Alexander Herbig, Alexander Seitz, Linda Grillová, Lenka Mikalová, Peter Komericki, Maria A Pando, Lucía Gallo Vaulet, Steven J. Norris, David Šmajs, Homayoun C. Bagheri
2016-01-01

Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen).

Andrew Rambaut, Oliver G. Pybus
2015-03-02

Massive migration from the steppe was a source for Indo-European languages in Europe

Johannes Krause, Harald Meller, Eszter Bánffy, Nadin Rohland, Susanne Nordenfelt, Iosif Lazaridis, Swapan Mallick, Eadaoin Harney, Kristin Stewardson, Nick Patterson, David Reich, Pavel Kuznetsov, Sandra L. Pichler, Roberto Risch, Anna Szécsényi-Nagy, Bastien Llamas, Wolfgang Haak, Alissa Mittnik, Alan J. Cooper, Kurt W. Alt, Matthias Meyer, Qiaomei Fu, Alexander Khokhlov, Michael Francken, Oleg Mochalov, Rafael Garrido-Pena, Manuel Rojo-Guerra, Vayacheslav Moiseyev, Guido Brandt, Christos Economou, Susanne Friederich, Fredrik Hallgren, Valery Khartanovich, Michael Kunst, Nicole Nicklisch, Christina Roth, Joachim Wahl, Dorcas Brown
2015-10-22

Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago

Søren Brunak, Eske Willerslev, Ludovic Orlando, Mait Metspalu, Christian Moliin Outzen Kapel, Thomas Sicheritz-Ponten, Mikkel Schubert, Martin Sikora, Marta Mirazón Lahr, Rasmus Nielsen, Kasper Nielsen, Andrey Epimakhov, Karl-Göran Sjögren, Anders Gorm Pedersen, Kristian Kristiansen, Simon Rasmussen, Morten Allentoft, Lehti Saag, Levon Yepiskoposyan
2015-10-12

Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA.

Janet Kelso, Viviane Slon
2015-02-12

ClonalFrameML: efficient inference of recombination in whole bacterial genomes

Xavier Didelot
2015-06-01

Global epidemiology of yaws: a systematic review

Oriol Mitjà Villar, Jürg Utzinger, Michael Marks, Quique Bassat
2014-10-23

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis

Johannes Krause, Iñaki Comas, Alexander Herbig, Kirsten I Bos, Anne Stone, Mireia Coscolla, Julian Parkhill, Jane Ellen Buikstra, Verena J Schuenemann, Sébastien Gagneux, Ricardo Guichón, Daniel H. Huson, Kelly M Harkins, Tessa M Campbell, Stefan Niemann
2014-03-06

Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array

James B Thissen, Jonathan Allen, Sharon N. DeWitte, Teresita M Porter, Hendrik N. Poinar, Crystal Jaing
2014-09-18

Ancient human genomes suggest three ancestral populations for present-day Europeans

Σβάντε Πέμπο, George van Driem, Lalji Singh, Johannes Krause, Daniel Corach, Pierre Zalloua, David Reich, Toomas Kivisild, Heng Li, Joachim Burger, Montgomery Slatkin, Janet Kelso, Igor Rudan, Kumarasamy Thangaraj, Ene Metspalu, Mait Metspalu, Richard Villems, Jüri Parik, Oleg Balanovsky, Alena Kushniarevich, Elena Balanovska, Levon Yepiskoposyan, Rita Khusainova, Nadin Rohland, Ruth Bollongino, Susanne Nordenfelt, Swapan Mallick, Elza Khusnutdinova, Sena Karachanak-Yankova, Draga Toncheva, Irene Gallego Romero, Ugur Hodoglugil, Nick Patterson, Evan E. Eichler, Tatijana Zemunik, Gabriel Bedoya, Francesca Brisighelli, Kay Prüfer, Cesare de Filippo, Sarah Tishkoff, William Klitz, Francisco Rothhammer, Hovhannes Sahakyan, Shahlo Turdikulova, Olga Utevska, Sergi Castellano, Peter H Sudmant, Valentino Romano, Francesco Cali, Ludmila Osipova, Antonio Salas, David Comas, Susanna Sawyer, Mark Thomas, Antti Sajantila, Cristian Capelli, Sardana Fedorova, Aashish R Jha, Wolfgang Haak, Cosimo Posth, Alissa Mittnik, Kirsten I Bos, Mikhail Churnosov, Alan J. Cooper, Bonnie Berger, Cheryl A Winkler, Qiaomei Fu, Matthias Meyer, Graciela Bailliet, Claudio M. Bravi, Iosif Lazaridis, Olga Posukh, Michael Francken, Mark Lipson, George Ayodo, Christos Economou, Fredrik Hallgren, Joachim Wahl, Gabriel Renaud, Karola Kirsanow, Elin Fornander, Dominique Delsate, Jean-Michel Guinet, Hamza A. Babiker, Ramiro Barrantes, Haim Ben-Ami, Judit Bene, Fouad Berrada, George B J Busby, Larissa Damba, Stanislav Dryomov, Jean-Michel Dugoujon, Marina Gubina, Brenna M Henn, Tor Hervig, Rick Kittles, Leila Laredj, Theologos Loukidis, Julio Antonio Marín Molina, Desislava Nesheva, Thomas Nyambo, Fedor Platonov, Ruslan Ruizbakiev, Ayele Tarekegn, Ingrida Uktveryte, Mikhail Voevoda, Andrés Ruiz-Linares, Rem I Sukernik

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