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Cites articles 19

Date

Title

Authors

2014-12-12

Whole-genome analyses resolve early branches in the tree of life of modern birds

Beth Shapiro, Eske Willerslev, Peter Houde, David Haussler, Joel Cracraft, Tandy Warnow, Per Alström, Bent Lindow, Toni Gabaldón, Ludovic Orlando, Thomas Sicheritz-Ponten, Klaus-Peter Koepfli, Jaime Huerta-Cepas, Hans Ellegren, Michael Bunce, Kasper Munch, Alexandros Stamatakis, Morgan Wirthlin, Nitish Narula, Alonzo Alfaro-Núñez, Claudia C Weber, Jason T Howard, Alexander Suh, Cai Li, Siavash Mirarab, Bent Petersen, Rute R. da Fonseca, Sankar Subramanian, Bastien Boussau, Paula F Campos, Francisco Prosdocimi, Brant C. Faircloth, Knud A. Jønsson, Guojie Zhang, Robb T. Brumfield, Edward L. Braun, Mads Frost Bertelsen, Mikkel Heide Schierup, Scott V. Edwards, Marcus Thomas Pius Gilbert, Michael W. Bruford, Erich Jarvis, Salvador Capella-Gutierrez, Richard Paul Scofield, Warren E. Johnson, Carsten Rahbek, Yinhua Huang, David M Lambert, Jun Wang, Yang Huanming, Jian Wang, Linnéa Smeds, Amy C. Driskell, Claudio V Mello, Peter V Lovell, Elizabeth Derryberry, David Mindell, Travis Glenn, Wesley C Warren, Jon Fjeldså, Andre J Aberer, Benoit Nabholz, Xiangjiang Zhan, Andrew Dixon, José Alfredo Samaniego Castruita, Zijun Xiong, Yongli Zeng, Oliver A. Ryder, Frank E. Rheindt, Gary R. Graves, Stephen J. O'Brien, Simon Y. W. Ho, Amhed M Vargas-Velazquez, Shiping Liu, Richard E Green, Polina L Perelman
2014-12-12

Comparative genomics reveals insights into avian genome evolution and adaptation

Eske Willerslev, Ludovic Orlando, David Haussler, Agostinho Antunes, Rui Borges, Alonzo Alfaro-Núñez, Qiye Li, Haofu Hu, Jason T Howard, Olle Håstad, Mikkel Schubert, Marta Farré, Cai Li, Rute R. da Fonseca, Jie Cui, Juan C. Opazo, Michael N. Romanov, Per Alström, Guojie Zhang, Edward L. Braun, Mads Frost Bertelsen, Scott V. Edwards, Marcus Thomas Pius Gilbert, Michael W. Bruford, Jun Wang, Erich Jarvis, João Paulo Machado, Warren E. Johnson, David W Burt, Carsten Rahbek, Imran Khan, Jon Fjeldså, Yang Huanming, Jian Wang, Erina Hara, Osceola Whitney, Miriam V Rivas, Elizabeth Derryberry, Andreas R Pfenning, David Mindell, Wesley C Warren, Peter F. Stadler, Kartik Sunagar, Peter Houde, Xiangjiang Zhan, Andrew Dixon, Zijun Xiong, Yongli Zeng, Oliver A. Ryder, Hailin Pan, Tobias Mourier, Mark S. Springer, Gary R. Graves, Stephen J. O'Brien, Luohao Xu, Yu Fan, Shiping Liu, Richard E Green, Federico G. Hoffmann
2014-12-11

Comparative genomic data of the Avian Phylogenomics Project

Guojie Zhang, Cai Li, Marcus Thomas Pius Gilbert, Erich Jarvis, Jun Wang
2014-12-11

Statistical binning enables an accurate coalescent-based estimation of the avian tree.

Siavash Mirarab, Bastien Boussau, Tandy Warnow
2014-12-11

Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes

Alexander Suh, Edward L. Braun, Jürgen Brosius, Arian F. A. Smit, Federico G. Hoffmann
2012-04

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis

Patricia Adair Gowaty, Travis Glenn, Brant C. Faircloth
2012-11-27

UCNEbase--a database of ultraconserved non-coding elements and genomic regulatory blocks
2012-04-20

A universal method for the study of CR1 retroposons in nonmodel bird genomes

Alexander Suh, Steve Donnellan, Jürgen Brosius
2012-01-09

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales.

Brant C. Faircloth, John E. McCormack, Robb T. Brumfield, Travis Glenn
2011

Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds

Alexander Suh, Jürgen Brosius
2011-12-01

SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.

Mark Holder, Tandy Warnow, C. Randal Linder
2010-04-01

The genome of a songbird

Hans Lehrach, Tim Birkhead, Lucinda Fulton, Paul Flicek, Elaine Mardis, Tina Graves, Evan E. Eichler, Doron Lancet, Tsviya Olender, Hans Ellegren, Chris Ponting, Constance Scharff, Erich Jarvis, Ya-Chi Lin, Axel Künstner, Albert J. Vilella, Julia George, Lesheng Kong, Susan Fairley, Jason T Howard, Iris Adam, Gloria Velasco, Christopher N. Balakrishnan, Jessica Stapley, William M McLaren, Andreas Heger, David F. Clayton, Xose S. Puente, David D. Pollock, Jon Slate, Scott V. Edwards, Terry Burke, David W Burt, Sarah E London, Shiaw-Pyng Yang, Simon White, Pat Minx, Jonathan V. Sweedler, Mark Batzer, Linnéa Smeds, Claudio V Mello, Arthur P. Arnold, Peter V Lovell, Osceola Whitney, Tarciso A F Velho, Andreas R Pfenning, Wesley C Warren, Richard K. Wilson, Miriam K Konkel, Carlos López Otín, Steve Searle, Jerilyn A Walker, Niclas Backström, Darren K Griffin, Preethi H Gunaratne, Marc Sultan, Ladeana Hillier, Asif T. Chinwalla, Robert Ekblom, Arian F. A. Smit, Robert Hubley, Joanne O. Nelson, Yun Li
2009-06-01

Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees.

Tandy Warnow, C. Randal Linder
2008-03-27

Recent developments in the MAFFT multiple sequence alignment program

Kazutaka Katoh
2005-07-06

An algorithm for progressive multiple alignment of sequences with insertions

Nick Goldman, Ari Löytynoja
2004-12-09

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Richard K. Wilson, David Haussler, Cheryll Tickle, Peer Bork, Webb Miller, Pavel A. Pevzner, Ewan Birney, Jun Wang, Susan Lucas, Sam Griffiths-Jones, Abel Ureta-Vidal, Alexandre Reymond, Catherine Ucla, Paul Flicek, Ivica Letunic, Elaine Mardis, Evan E. Eichler, Gane Ka-Shu Wong, Christian von Mering, Anton Nekrutenko, Patrick Minx, Hans Ellegren, Leo Goodstadt, Chris Ponting, Francesca Chiaromonte, Laura Elnitski, Adam C. Siepel, Caleb Webber, Isabelle Dupanloup, Sergi Castellano, Eray Tuzun, Josep F. Abril, Michael M. Hoffman, Terrence S. Furey, David Torrents, Michael N. Romanov, Lisa Stubbs, Lina Jacobbson, Francisco Camara, Lior Pachter, Angie S. Hinrichs, Shiaw-Pyng Yang, Simon J. Hubbard, Guillaume Bourque, Catrina Fronick, Roderic Guigó i Serra, Yang Huanming, Leif Andersson, Colin N Dewey, Gill Bejerano, Jim Kent, Wesley C Warren, James Taylor, Stilianos Antonarakis, Ross Hardison, Genís Parra, Robert Castelo, Maxim Koriabine, Mikhail Nefedov, Monique Rijnkels, Sean J. Humphray, Asif T. Chinwalla, Kim Delehaunty, Tracie L. Miner, Joanne O. Nelson, Craig S. Pohl, Darren V. Grafham, Nicholas J Dickens, Mikita Suyama, Pallavi Eswara, David Shteynberg, Elizabeth J. Huckle, Eduardo Eyras, Colin Kremitzki, Svitlana Tyekucheva, Sourav Chatterji, Brian J Raney, Ladeana Hillier, Lucinda Fulton, Stephen Searle, Rachel A. Harte, Arian F. A. Smit, Evgeny M. Zdobnov, David W Burt, Darren K Griffin, Sandra W. Clifton, Manyuan Long, Martien Groenen, Jerry B. Dodgson, Dan Layman, Lachlan G. Oddy, Jennifer Randall-Maher
2004-04

Aligning multiple genomic sequences with the threaded blockset aligner

Eric D. Green
2003-02-19

GapCoder automates the use of indel characters in phylogenetic analysis
2000-06

Gaps as characters in sequence-based phylogenetic analyses

Article - wd:Q28652837

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